Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03321 ATGGGAAGAGCTCCATGTTGTGACAAGGCAAATGTAAAGAAAGGTCCATGGAGTCCTGAAGAAGATGCAAAGCTCAAAGAGTACATTCACAAACATGGAACTGGAGGAAACTGGATTTCTCTCCCACAAAAAGCTGGTTTGAAAAGATGTGGGAAAAGTTGTAGACTTAGATGGCTTAATTATCTTAGACCCAATATTAAGCATGGAGAGTTTTCTGAAGATGAAGATAGAATGATCTGCTATCTCTTTGCCAGTATTGGAAGCAGATGGTCAATAATAGCATCTCAGTTGCCAGGAAGGACAGACAATGACATCAAGAACTATTGGAATACCAAGCTTAAGAAAAAGATGATGCCAATTATGATGGACCCTAATAATAATAATAAGCCTCATCCCCAAATTACCCTTTTGTCCATCCTCCAAAATTCATCATCAACACAACATTCTCCTTCTCCTTCATCTCCTCCACCATTCATATCAAACACAACCGCCACTAATAATAATAATGACACTTATTATTACTACCACCCTCATGAGCCCATTATTTCTTACTCATCATCAAGTGATCTTATCCTCAATGCCAATAGTAGTTCTTCTACTTCTTCTGATTCTATCATCTTTCAATCTCAACAACAAGAATCTTATATGGATAATAACACCATTGATCATCAGAATTATCACCAAGAACCAGCTGAACAAGTTGGATATTGTGGTGATGATTATTACTATGATTATGGTACCTTTGTGGACCATATAGTTGCAAATAATAATCATAATAATTACCACTATAGTGGGGTAGAAGATGCACAAAAGTTTATGCATTTTAATGGTGGCAGGGGTAATGTGGGGACAGAGAAACAAAGTAGTACCTTGTTGGAAGAAAATCCATTGGATAATTATGGAATAGATGAGACTAAAGAGCTTGTATTAAGCAACAATAACTTTTTGTTTGATCACAACTAG 963 0.3634 MGRAPCCDKANVKKGPWSPEEDAKLKEYIHKHGTGGNWISLPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSEDEDRMICYLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMPIMMDPNNNNKPHPQITLLSILQNSSSTQHSPSPSSPPPFISNTTATNNNNDTYYYYHPHEPIISYSSSSDLILNANSSSSTSSDSIIFQSQQQESYMDNNTIDHQNYHQEPAEQVGYCGDDYYYDYGTFVDHIVANNNHNNYHYSGVEDAQKFMHFNGGRGNVGTEKQSSTLLEENPLDNYGIDETKELVLSNNNFLFDHN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03321 320 SMART sant 67 115 IPR001005 -
Aip02g03321 320 SMART sant 13 64 IPR001005 -
Aip02g03321 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Aip02g03321 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Aip02g03321 320 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Aip02g03321 320 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Aip02g03321 320 Gene3D - 7 68 - -
Aip02g03321 320 CDD SANT 16 62 IPR001005 -
Aip02g03321 320 PANTHER TRANSCRIPTION FACTOR RAX3 1 232 - -
Aip02g03321 320 MobiDBLite consensus disorder prediction 142 163 - -
Aip02g03321 320 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Aip02g03321 320 CDD SANT 70 113 IPR001005 -
Aip02g03321 320 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aip02g03321 320 PANTHER OS09G0431300 PROTEIN 1 232 - -
Aip02g03321 320 Gene3D - 69 135 - -
Aip02g03321 320 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03321 Aip-Chr2 109893169 109896485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03321 1 118 MYB Transcription Factor Family AT5G57620 86.441 3.27e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip02g03321 Myb_DNA-binding 3.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03321 K09422 - gmx:100820139 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03321 02 109893169 109896485 Aip02g03321 02 109893169 109896485 ECH