Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03307 ATGTCTAATCCCTATGATCACGGAGCTTCTCCATTTATGCACCTAAGTGAGAGAGAGAGAGAGAGAGTGAAACTCTTCCAAAGAAGCAGAAGAATAATGTTCCAAAGAAGGTGCATTGTGGTAACAATAACATATGTATTATTGGGATGCATTATTGTGGATCATGGAAGAGCAACAATGGTGAATCTCACACTCCAAGGACAACATCCAAACCCTGAAGCTCTTGTTACACAACTTCATAGTAAGATTAATGCTTCAATAGCAAGAAGGGAGATGTTAGCATCATCATCATCATGCCTAACAGGGAACCCCATTGATGATTGCTGGAAATGTGACCCAAATTGGGCCCAAAACAGACAAAGGCTAGCCGATTGCGCAATTGGGTTCGGTCAAAACGCAAAGGGGGGAAAAGGTGGCGAGTTCTACATAGTAACCGATTCGTCAGACAATGATGCTGTAAACCCTAAACCCGGAACCCTAAGATATGCCGTGATTCAAAATGAGCCACTTTGGATAGTGTTTCCTAGTAACATGATGATTAAGCTTTCACAAGAACTCATATTCAATAGCTTCAAGACCATTGATGGGCGTGGTGCTGATGTGCACATTGTTGGTGGAGGGTGCATTACTCTTCAATATATTAGCAATGTTATCATACATAACATTCACATTCACCATTGTCACCCCTCAGGTAATGCTATGGTGCGATCGAGTCCAGAGCACTATGGATACCGCACTGAATCGGACGGTGATGGCATCTCCATATTTGGATCGCATGACATCTGGATCGATCACTGCACTCTATCTCGTTGCAAGGATGGGCTTATTGATGCAGTTATGGGCTCAACTGCCATCACTGTGTCCAACAACCACTTTTCTCATCACAATGACGTAATGCTCTTGGGCCATAGTGACCACTACTTACCTGACTCAGCCATGCAGGTTACCATTGCCTTTAACCATTTCGGCGAAAAACTCGTCCAGCGCATGCCACGTTGCAGGCTAGGATATGTTCACATAGTCAATAACGACTTCACTGCTTGGCAGATGTATGCGATCGGGGGCAGTGGATCCCCTACTATTAATAGTCAGGGGAATCGATACACTGCTCCCGACAACTCATTTGCCAAGCAAGTGACAAAGCGGTTGGATGTCGGGGAAGGCGAGTGGACAGGGTGGAATTGGAGGTCAGAAGGGGATGTGATGGTGAATGGAGCATTTTTTGTTCCATCAGGGGAAGGTGCTGAGGTTAAGTATGAGAAGGCTTATAGTGTGGAGCCTAAGTCTGCTGATCGCATTTCATTGCTTACTATGTCTGCTGGAGTTCTTGGTGTGGCTAGGGACAATAACCTTGGCATGTGGAGTAGAGGACCCAACGACGGTGGCAGTTATATTTCAACAAACGGTCCAGAATTCACTGATGAAATGTCAAAGGCTGCAATGCTGTTTCCACCTTCACATACTATCACATTTGTATCTGTTTTTGTTACAATGCTCTGCTTGTTATCTCACACAATTACTCCCCTAATAACATTAGTACTATAA 1545 0.4447 MSNPYDHGASPFMHLSERERERVKLFQRSRRIMFQRRCIVVTITYVLLGCIIVDHGRATMVNLTLQGQHPNPEALVTQLHSKINASIARREMLASSSSCLTGNPIDDCWKCDPNWAQNRQRLADCAIGFGQNAKGGKGGEFYIVTDSSDNDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNAMVRSSPEHYGYRTESDGDGISIFGSHDIWIDHCTLSRCKDGLIDAVMGSTAITVSNNHFSHHNDVMLLGHSDHYLPDSAMQVTIAFNHFGEKLVQRMPRCRLGYVHIVNNDFTAWQMYAIGGSGSPTINSQGNRYTAPDNSFAKQVTKRLDVGEGEWTGWNWRSEGDVMVNGAFFVPSGEGAEVKYEKAYSVEPKSADRISLLTMSAGVLGVARDNNLGMWSRGPNDGGSYISTNGPEFTDEMSKAAMLFPPSHTITFVSVFVTMLCLLSHTITPLITLVL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03307 514 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Aip02g03307 514 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Aip02g03307 514 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Aip02g03307 514 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
Aip02g03307 514 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Aip02g03307 514 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Aip02g03307 514 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Aip02g03307 514 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Aip02g03307 514 SMART amb_all 177 374 IPR002022 -
Aip02g03307 514 Gene3D - 102 444 IPR012334 -
Aip02g03307 514 PANTHER PECTATE LYASE 35 467 - -
Aip02g03307 514 Pfam Pectate lyase 186 366 IPR002022 -
Aip02g03307 514 SUPERFAMILY Pectin lyase-like 98 430 IPR011050 -
Aip02g03307 514 PANTHER PECTATE LYASE 18-RELATED 35 467 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03307 Aip-Chr2 109802996 109806983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03307 32 506 Polysaccharide Lyase AT3G53190 69.087 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03307 K01728 - gmx:100815062 769.229