Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03305 ATGGAGGAGGTTCAATTAGAGGAACAACAACAACAACTTCTTGTTGTTAAAGGCAAACGAAGCAAGAGGCCGCGGCCGCCTTCGCCTTCGCCATCACCACCACCACCACTTGAATTTGCACCAATCATCATCAAAAGCAACAACAACAACATGATGATGATGATGCCACCACCAACTAGTGCAACTACTAGTACAACAACAACAACATTAGATGATGAAAACATGGCCTATTGTCTCATTCTATTGGCACAAGGACACCATCATCATCATCATCATCATAATAATAATAAAGCATCATCATCATCACATCATGATGATCATCATGAGAAAAAGAGCATCTACTACCAATGCAAGACGTGTAACAAATCATTCCCTTCATCTCAAGCACTTGGTGGACATAGAGCTAGCCACAAGAAATTATTATTACCAAACAACAAATCAAAGAGTAATAATAATGCTTATGATCATGATCATGAATTAGAGGACCTCAACACAAGAACAACAACAAAAACAACAAGCACCATGCTATCTTTGCAAGTATCATCATCAAATACTACCACAATAATAACAAAAAGAAGTAGTACTAATAATAATAGTGCTAATAATAGTAGAAAATGCAAGCTACATGAATGTTCTATTTGTGGTGCTGGATTCTCATCCGGCCAAGCATTAGGGGGTCATATGAGAAGGCATAGAAATTTTGATGAAGGTGACAAAAACAAGAAACCAATAAGGAATCATTTTTTGAAGCTGGATTTGAATCTTCCAGCATCACCGGAAGATGATCAAAGAGAATCATCATCTAAGTTCCCATTTCAAATAAGGGAGAAAGTTATTGTCTTCTCTTCTTCTGCACCTTCTTTGGTGGATTGTCATTACTGA 882 0.3741 MEEVQLEEQQQQLLVVKGKRSKRPRPPSPSPSPPPPLEFAPIIIKSNNNNMMMMMPPPTSATTSTTTTTLDDENMAYCLILLAQGHHHHHHHHNNNKASSSSHHDDHHEKKSIYYQCKTCNKSFPSSQALGGHRASHKKLLLPNNKSKSNNNAYDHDHELEDLNTRTTTKTTSTMLSLQVSSSNTTTIITKRSSTNNNSANNSRKCKLHECSICGAGFSSGQALGGHMRRHRNFDEGDKNKKPIRNHFLKLDLNLPASPEDDQRESSSKFPFQIREKVIVFSSSAPSLVDCHY 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03305 293 MobiDBLite consensus disorder prediction 1 40 - -
Aip02g03305 293 SMART c2h2final6 115 137 IPR013087 -
Aip02g03305 293 SMART c2h2final6 209 231 IPR013087 -
Aip02g03305 293 Pfam C2H2-type zinc finger 114 139 - -
Aip02g03305 293 Pfam C2H2-type zinc finger 209 232 - -
Aip02g03305 293 PANTHER ZINC FINGER PROTEIN ZAT5 48 293 - -
Aip02g03305 293 MobiDBLite consensus disorder prediction 25 40 - -
Aip02g03305 293 ProSitePatterns Zinc finger C2H2 type domain signature. 211 231 IPR013087 -
Aip02g03305 293 Gene3D Classic Zinc Finger 182 267 - -
Aip02g03305 293 SUPERFAMILY beta-beta-alpha zinc fingers 114 231 IPR036236 -
Aip02g03305 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 137 IPR013087 -
Aip02g03305 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 236 IPR013087 -
Aip02g03305 293 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Aip02g03305 293 PANTHER ZINC FINGER PROTEIN ZAT5 48 293 - -
Aip02g03305 293 MobiDBLite consensus disorder prediction 88 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03305 Aip-Chr2 109778426 109779307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03305 13 293 C2H2 Transcription Factor Family AT5G03510 33.861 4.50e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip02g03305 zf-C2H2_6 9.5e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03305 - - adu:107476344 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03305 02 109778426 109779307 Aip09g02755 09 126803185 126804896 ECH
Aip02g03305 02 109778426 109779307 Aip02g03305 02 109778426 109779307 ECH
Aip02g03305 02 109778426 109779307 Aip08g00577 08 5029550 5030663 ECH
Aip02g03305 02 109778426 109779307 Aip03g00281 03 2737167 2738541 ECH
Aip06g01832 06 51970736 51971904 Aip02g03305 02 109778426 109779307 PCT