Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03291 ATGTTCACACCACATTCAAGGTCTCCTAAACCAGTATTGTTTCCCAGTCCATCAAGCACTTCTGAACTCTGTAATTCCTCACAAACTAAGAGACGCTGGAAGAAAAGAGAAAAGTCATATAAACTGACAGTAAAATTAAACACTGCTCCAGTTACTTCAACTTCGATGTTTCCAGTTACTTCAACTTCGACGTGTTTATCTTCAGAAAATAAGAGCCAGTGGAAGATCGCCAAAAAGTATCAGCGACTGCATAAATTAATTTTTGAAGAAAATGGATTGCCTGATGGAGCCAAAGTAGCTTATTATGCACGTGGACAGAAATTGCTTGTAGGTATCAAAAGGGGCTCTGGAATTGTGTGTGGATGCTGTAACACGCTGGTCAGCCCTTCACAATTTGAGGTACATGCAGGTTGGGCTTCTCGAAGGAAACCTTATGCATACATCTACACTTCAGATGGGATGTCTCTCCATGAGTTAGCAATGTTTATACTAAAAGAACGCAAATACACTGCAAAGTATAATGATGATCTATGCGTTGTCTGTTGGGATGGGGGGAACCTGCTGCTCTGTGATGGATGCCCAAGGTCGTTTCACAAAGAATGTGCGTCAGTATCAAGTATTCCTCGTGGTAATTGGTATTGTCAAATTTGCCAAAACATGTTCCAAAGAGAAAGTTTTGTTGCGGACAATGTCCATGCTGTGGCAGCAGAAAGGGTTGAAGGAGTTGGTTCCATTGAACAGATTGCCAGATGCATTCGCATAGTAAAAGATAGCGATGCTGAGATGGGTGGATGTGTTTTGTGCGGAGGTTCTGACTTCAGCAGATCAGGATTTGGTCCACGCACAATAATATTCTGTGATCAGTGTGAAAAGGAATACCATGTTGGTTGTTTGAGGGATCATAAGATGGCATTTTTAAAGGAGTTGCCAGAAGGGATTTGGATTTGCTGCGATGATTGCACAAGGATACATTCTATTTTGGAGAACATCCTGGTTAGGGGGCCTGAGAGACTTCCGGAATCTCTCTTGGATGTAATAAAGGTGAAGCAAGAGGAAATACTTTTAGGACTACCTAATGAGATTGATGTAAGATGGAGACTTCTTAATGGAAAAATTGCTAGCTCTGAAACTAGGCCATTCCTTTTGCAGGCTGTGTCAATGTTTCAAGAATGTTTTGATGCTATTATTGATCCAGTTAGTGGGAGTGACCTTATTCCTGCCATGGTTTATGGAAGGAGTGTACAGACTCAGGATTTTGGAGGATTTTATTGTGCATTATTAATGGTCAATTCATGTGTGGTATCTGCGGCTATGCTTCGAGTTTTTGGGAGAGATGTTGCAGAGCTCCCTTTAGTTGCAACGTGTTATAAGAACCGTGGAAAGGGTTATTTCCAAACGCTGTTCTCTTGCATTGAGAGGCTGCTGGCTTTCTTGAATGTGAAGAACTTTGTTCTACCAGCTGCTGAGGAAGCAATATCTATATGGACCGATAAATTTGGGTTTAGCCTGATGAAACCTGAGCAGCTTAGCAATTATAGAAAGAACTTCAGTCAGATGATGGCATTCAAAGGGACAATTATGCTCGAAAAACCGGTTCCATCGTGTCGGATCGTCAATACCCGATCCTGA 1629 0.4174 MFTPHSRSPKPVLFPSPSSTSELCNSSQTKRRWKKREKSYKLTVKLNTAPVTSTSMFPVTSTSTCLSSENKSQWKIAKKYQRLHKLIFEENGLPDGAKVAYYARGQKLLVGIKRGSGIVCGCCNTLVSPSQFEVHAGWASRRKPYAYIYTSDGMSLHELAMFILKERKYTAKYNDDLCVVCWDGGNLLLCDGCPRSFHKECASVSSIPRGNWYCQICQNMFQRESFVADNVHAVAAERVEGVGSIEQIARCIRIVKDSDAEMGGCVLCGGSDFSRSGFGPRTIIFCDQCEKEYHVGCLRDHKMAFLKELPEGIWICCDDCTRIHSILENILVRGPERLPESLLDVIKVKQEEILLGLPNEIDVRWRLLNGKIASSETRPFLLQAVSMFQECFDAIIDPVSGSDLIPAMVYGRSVQTQDFGGFYCALLMVNSCVVSAAMLRVFGRDVAELPLVATCYKNRGKGYFQTLFSCIERLLAFLNVKNFVLPAAEEAISIWTDKFGFSLMKPEQLSNYRKNFSQMMAFKGTIMLEKPVPSCRIVNTRS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03291 542 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 7 538 - -
Aip02g03291 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 323 IPR013083 -
Aip02g03291 542 SMART PHD_3 264 321 IPR001965 -
Aip02g03291 542 SMART PHD_3 177 218 IPR001965 -
Aip02g03291 542 SUPERFAMILY FYVE/PHD zinc finger 256 318 IPR011011 -
Aip02g03291 542 MobiDBLite consensus disorder prediction 1 28 - -
Aip02g03291 542 ProSitePatterns Zinc finger PHD-type signature. 178 217 IPR019786 -
Aip02g03291 542 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 418 505 IPR016181 -
Aip02g03291 542 MobiDBLite consensus disorder prediction 12 27 - -
Aip02g03291 542 ProSiteProfiles Zinc finger PHD-type profile. 175 220 IPR019787 -
Aip02g03291 542 PANTHER AUTOIMMUNE REGULATOR 7 538 - -
Aip02g03291 542 Pfam Tify domain binding domain 114 161 IPR032308 -
Aip02g03291 542 Pfam PHD-finger 178 219 IPR019787 -
Aip02g03291 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 252 IPR013083 -
Aip02g03291 542 SUPERFAMILY FYVE/PHD zinc finger 159 219 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03291 Aip-Chr2 109682805 109687430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03291 74 539 PHD Transcription Factor Family AT2G36720 58.887 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip02g03291 TDBD 2.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03291 - - adu:107476252 1084.71