Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03281 ATGTTTGACGAGAAAGCCATGTGGGACTGGGACACAAAGACAGAAAAGCATCCGATTGTGATTTCAAATACATGTGATGATGAAGAAGAAAGACAACCGGAAGCAACCGAACAACCAGAATCATCTAGAAGACCTCAAAGAGAGCGGAGACTACCTGCTAGATTAGCAGATTATGAATACGATCCGGAAGACTCCAATATCCAAGCGGTTACTTCTGGCGACACGCCGTACACCTCGGCGGCGACGTTCGAGGACCTGAACTTGTCGCCGGAGCTTTTGAGAGGACTCTACGTTGAGATGAGGTTCCAGAAACCGAGCAAGATCCAAGCTATAAGCTTGCCGATGATCTTGAATCCGCCGCATCGTGATTTGATCGCTCAGGCTCACAACGGTTCCGGCAAGACCACGTGCTTTGTTTTAGGGATGCTTAGTCGTGTGGATCCTTCGGTGCAAGCTCCTCAAGCTCTCTGCATTTGTCCAACGAGGGAGCTTGCTATTCAGAACACTGAAGTTCTCCGGAAGATGGGGAAGCACACAGGGATTAGCTCGGAGTGTGCCGTTCCGACAGATAGCAGGGATTCACTTCCAATTCAAAAACGGGAGCCAATTAAGGCTCAGGTGGTTATTGGGACTCCTGGCACCATAAAGAAGTGGATTTCTTTCAAGAAATTGGGTGTGACCAGATTGAAGATTCTTGTCTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAAGGATGATTCCTTGAGGATAATGAAAGAAATAGAAAAATTCAATTCTAGCTGCCAGGTTCTTCTATTTTCTGCCACATTCAATGACATTGTCAAGAACTTTGTTGAGAGGACAGTTAAAAAGGACCATAATAAACTTTTTGTTAAGAAAGAAGAGCTTTCTTTAGATGCTGTGAAACAGTATAAAGTGCGCTGCCCTGATGAGTTGTCGAAGATTGAGGTGATAAAAGATTACATATTCGAATTAGGAGAAAATGTGGGCCAAACCATCATATTCGTGCGCACGAGACAGAGTGCAAAAATGCTGCACAAGTCACTTGTCGATATGGGTTATGAGGTTACCTCGATACAAGGTGCTCTTGACCATGAAGAGAGAGACAAAATTGTCAAAGAGTTCAGAGATGGTTTGACTCAAGTTCTTATATCCACGGATGTTCTTGCTCGAGGCTTTGATCAGCAACAGGTCAATTTGGTTATCAACTATGATCTCCCAATAAAACATACTGCGGAGTATACACGGGAATTTGAGCCTGATTATGAGGTGTACTTGCACAGAGTTGGTAGGGCTGGTCGATTTGGCCGTAAGGGGGCTGTGTTTAACCTAATATATGATGAAAAAGATGAAAGGCTGATGTCAAAGATCGAGAACCATTTTGGCACCCGTGTATCAGAGGTACGAGAAAAAAGTGTTGAAGACTATAAAGCTGCTCTTAAGGAAGCCGGTTTATTACAATGA 1473 0.4406 MFDEKAMWDWDTKTEKHPIVISNTCDDEEERQPEATEQPESSRRPQRERRLPARLADYEYDPEDSNIQAVTSGDTPYTSAATFEDLNLSPELLRGLYVEMRFQKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPSVQAPQALCICPTRELAIQNTEVLRKMGKHTGISSECAVPTDSRDSLPIQKREPIKAQVVIGTPGTIKKWISFKKLGVTRLKILVFDEADQMLAEDGFKDDSLRIMKEIEKFNSSCQVLLFSATFNDIVKNFVERTVKKDHNKLFVKKEELSLDAVKQYKVRCPDELSKIEVIKDYIFELGENVGQTIIFVRTRQSAKMLHKSLVDMGYEVTSIQGALDHEERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPIKHTAEYTREFEPDYEVYLHRVGRAGRFGRKGAVFNLIYDEKDERLMSKIENHFGTRVSEVREKSVEDYKAALKEAGLLQ 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03281 490 Gene3D - 61 297 IPR027417 -
Aip02g03281 490 PANTHER DEAD-BOX HELICASE DBP80 61 469 - -
Aip02g03281 490 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 320 480 IPR001650 -
Aip02g03281 490 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 115 291 IPR014001 -
Aip02g03281 490 Gene3D - 298 487 IPR027417 -
Aip02g03281 490 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 81 110 IPR014014 GO:0003724
Aip02g03281 490 SMART ultradead3 101 307 IPR014001 -
Aip02g03281 490 MobiDBLite consensus disorder prediction 18 56 - -
Aip02g03281 490 Pfam Helicase conserved C-terminal domain 317 439 IPR001650 -
Aip02g03281 490 CDD DEADc_DDX19_DDX25 88 292 - -
Aip02g03281 490 CDD SF2_C_DEAD 304 448 - -
Aip02g03281 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 457 IPR027417 -
Aip02g03281 490 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 61 469 - -
Aip02g03281 490 SMART helicmild6 346 439 IPR001650 -
Aip02g03281 490 Pfam DEAD/DEAH box helicase 107 279 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03281 Aip-Chr2 109589650 109601451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03281 59 471 Eukaryotic Initiation Factors Gene Family AT1G72730 36.768 4.97e-73 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03281 K18655 - gmx:100778091 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03281 02 109589650 109601451 Aip02g03281 02 109589650 109601451 ECH