Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03279 ATGGCGGCGGCGACGGTGGTTCCGGCGACGACAGTGGTTCCGGCGACGGCGTCGCTCTACGTTGGAGACCTGCACCCTGATGTGGTAGACAGCGAGCTGTTCGAGGCGTTCTCGGAGTTCAAGAGCATCGCCTCCGTTCGAATCTGCAAAGACTCTGCCACAGGGAGGTCACTCTGTTACGGTTACGTCAACTTCATTTCTCACCAAGACGCAAGTCGTGCAATTGAGTTGAAGAATCATTCTTTACTACATGGAAAAGTGATAAGGGTCATGGTCGCGAGTCGCGATCCTGATGTGAGAAAAAGTGGCAGAGGGAATGTTTTTGTTAAGAACTTAGCTGAATCCATAGATAATGCGGAATTACATGATTTATTTCAAAAGTTTGGAAATATCTTGTCCAGCAAAGTTGTGATGTCGGAGGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATGCTGCCATCGAGAAGTTGAATGGCATTACTGTTAAAGATAAGCAGATATATGTTGGGAATTTTGTGAAAAAGAGTGAACGCATACTGCCTGATCCTGAAGCCAAATATACAAATATATACATCAAGAATTTGGACCCAGATATTACGGAAGAACTCCTTCAGAAGAAGTTTTCTTCTTTTGGAAAAATTATGAGCCTGGCTATAGCAAAAGATGCCAATGGGATGTCAAAGGGTTTTGCATTTGTGAACTATGATAACCCAGAGGAAGCTAAACAGGCAATGGAAACAATGAATGGATCACAATTTGGTTCAAAGATTCTATATGTAGCCAGGGCACAAAAGAAGGCTGAGCGTGAGCAGATCTTAAATCATCTGTTTGAAGAGAAACGTAAGGAACACATCTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATTAATGATAGTGTCACTGATGACCAACTACGAGAGCACTTCAGTGCATGTGGCACAATTACATCTGCTAAAGTCATGCAAGATGAGAAAGGTGTAAGCAAGGGGTTTGGCTTTGTCTGCTTCTCTACCCCTGAGGAGGCCCATAAAGCAGTGAACACTTTTCATGGATGCATGTTCCATGGTAAACCACTATATGTTGCTCTTGCCCAGAGGAAAGAGGATAGGCAAACACAGTTGCAGCTCTACTTTTCTCAGCAATTACCAGGGCTAGGTGCACCTTCAAATGCAGTTATTCCTGGTGGATATCCTCGTTTCTACTATACTGGTGGAGTTCTTTCACATGTCCCTTCTCAACCTGGGATGATGTATCAACAACATCTTGGATTGAGGTCAGGTTGGAGGGCTAATAATGCTTTTGCACCTCCCACTAGATCATTTCAGCAGTCTGCAGCTCCTAACGTTTCAAACAATACTAGGCAGCATAGGCAAAACAGAGGTAGGATGAACGGACACACAAATTCACATGGAAAAGCATACTCTTCTCAGTCAGCAGCCTCTTCTAAAGACTCAAGTGCCCAGCAGTCTGGACAGGCTATTTTTGTTCTCGGTGGACACCGGAATGTGATGGAAAAAGGATCTGGAATTTCATCCTCTGGAGGGTCTCAGGGATCAGAAATGCTGCATAGTATGCTTGCTACTGCTGTCCCCGAGCAACAGAAACAGATACTTGGCGAGCGTCTTTTCCCACTTATCAAGAAACTCAAGCCTAACTTGGCATCAAAGATTACAGGAATGCTTTTGGAGATGGACAATGCAGAATTGCTGCTGCTCCTGGAATCACCGGAATCACTTTCTGCAAAGGTGGAAGAAGCTGTGCAAGTGCTTAAGAATTCCACCACCAAGGTTTCTGGCCAGGAAGCATTTCATCCGAACTTGCTTTCGGCTGAAGTTACCGTTAACTGA 1878 0.4436 MAAATVVPATTVVPATASLYVGDLHPDVVDSELFEAFSEFKSIASVRICKDSATGRSLCYGYVNFISHQDASRAIELKNHSLLHGKVIRVMVASRDPDVRKSGRGNVFVKNLAESIDNAELHDLFQKFGNILSSKVVMSEDGKSKGYGFVQFESEESANAAIEKLNGITVKDKQIYVGNFVKKSERILPDPEAKYTNIYIKNLDPDITEELLQKKFSSFGKIMSLAIAKDANGMSKGFAFVNYDNPEEAKQAMETMNGSQFGSKILYVARAQKKAEREQILNHLFEEKRKEHILKYKGSNIYVKNINDSVTDDQLREHFSACGTITSAKVMQDEKGVSKGFGFVCFSTPEEAHKAVNTFHGCMFHGKPLYVALAQRKEDRQTQLQLYFSQQLPGLGAPSNAVIPGGYPRFYYTGGVLSHVPSQPGMMYQQHLGLRSGWRANNAFAPPTRSFQQSAAPNVSNNTRQHRQNRGRMNGHTNSHGKAYSSQSAASSKDSSAQQSGQAIFVLGGHRNVMEKGSGISSSGGSQGSEMLHSMLATAVPEQQKQILGERLFPLIKKLKPNLASKITGMLLEMDNAELLLLLESPESLSAKVEEAVQVLKNSTTKVSGQEAFHPNLLSAEVTVN 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03279 625 CDD RRM1_I_PABPs 18 97 - -
Aip02g03279 625 SUPERFAMILY PABC (PABP) domain 532 610 IPR036053 GO:0003723
Aip02g03279 625 Gene3D - 287 385 IPR012677 -
Aip02g03279 625 Gene3D - 186 286 IPR012677 -
Aip02g03279 625 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 177 IPR000504 GO:0003723
Aip02g03279 625 PANTHER POLYADENYLATE-BINDING PROTEIN 14 503 - -
Aip02g03279 625 PANTHER POLYADENYLATE-BINDING PROTEIN 522 610 - -
Aip02g03279 625 SMART rrm2_1 18 91 IPR003954 GO:0003676
Aip02g03279 625 SMART rrm2_1 197 269 IPR003954 GO:0003676
Aip02g03279 625 SMART rrm2_1 106 178 IPR003954 GO:0003676
Aip02g03279 625 SMART rrm2_1 300 372 IPR003954 GO:0003676
Aip02g03279 625 MobiDBLite consensus disorder prediction 443 495 - -
Aip02g03279 625 Pfam Poly-adenylate binding protein, unique domain 536 600 IPR002004 GO:0003723
Aip02g03279 625 SUPERFAMILY RNA-binding domain, RBD 187 281 IPR035979 GO:0003676
Aip02g03279 625 Gene3D - 9 106 IPR012677 -
Aip02g03279 625 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 17 601 IPR006515 GO:0003723
Aip02g03279 625 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 273 IPR000504 GO:0003723
Aip02g03279 625 Gene3D - 107 185 IPR012677 -
Aip02g03279 625 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 376 IPR000504 GO:0003723
Aip02g03279 625 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 265 IPR000504 GO:0003723
Aip02g03279 625 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 369 IPR000504 GO:0003723
Aip02g03279 625 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 89 IPR000504 GO:0003723
Aip02g03279 625 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 175 IPR000504 GO:0003723
Aip02g03279 625 SMART poly_2 540 603 IPR002004 GO:0003723
Aip02g03279 625 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Aip02g03279 625 SUPERFAMILY RNA-binding domain, RBD 297 392 IPR035979 GO:0003676
Aip02g03279 625 SUPERFAMILY RNA-binding domain, RBD 17 184 IPR035979 GO:0003676
Aip02g03279 625 CDD RRM4_I_PABPs 298 376 - -
Aip02g03279 625 SMART rrm1_1 18 91 IPR000504 GO:0003723
Aip02g03279 625 SMART rrm1_1 197 269 IPR000504 GO:0003723
Aip02g03279 625 SMART rrm1_1 300 372 IPR000504 GO:0003723
Aip02g03279 625 SMART rrm1_1 106 178 IPR000504 GO:0003723
Aip02g03279 625 Gene3D - 526 616 - -
Aip02g03279 625 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 528 605 IPR002004 GO:0003723
Aip02g03279 625 PANTHER RNA BINDING PROTEIN 522 610 - -
Aip02g03279 625 PANTHER RNA BINDING PROTEIN 14 503 - -
Aip02g03279 625 CDD RRM2_I_PABPs 103 179 IPR045305 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03279 Aip-Chr2 109574078 109577944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03279 1 622 Eukaryotic Initiation Factors Gene Family AT2G36660 52.540 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03279 K13126 - gmx:100779547 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03279 02 109574078 109577944 Aip02g03279 02 109574078 109577944 ECH