Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03255 ATGAAAAAACCAAACGAGGAACCAAAGGGTAAAGCTCCAGCACCTGATTCTCCTTCTGATATTGAGCAGCTGGGGATGTCCACAACAGGGTTCTCTCCTTTGGAGTTTAGTTCTCAACCATTCTCATCAGCTTTTGATGACTCTTTTGACATTATTGATGATACCTCTTTCATGGAATTTGAATCATTCTCAACAGCTATGAACCATCCACCACCACAACCACCATCTACAACTACAACAATAACCACCACCACTACTACGTGTTTGGATAACGTTGGTGGGGCTGTTGGGCCATTGCCTCAGCCATTGGAGTGCTTGCACGGGAATCCTGTTCCACCCTTTTTGTCTAAAACCTTCGACCTTGTGGATGACCCTTCTTTGGATCCTATCATCTCATGGGGCTCCACTGGTGCTAGCTTCGTTGTGTGGGACCCTATGGAGTTTTCAAGGCTCGTGTTGCCCCGGAATTTCAAGCACAACAATTTCTCCAGTTTTGTTCGCCAGCTGAATACTTACGGATTCCGCAAGATTGACACTGACAAGTGGGAGTTTTTCAATGAAGCTTTCCAGCGAGGGAAGAAACATTTACTGAAGAACATCCAACGGCGCAGGTCAACTCAATCGCAGCAAGTTGGTAGCTACATTGGAACTTCTACTGATGCTGGGAGACCTGGACTCGAGGTTGAAATAGAGCTACTGAGGAAGGAGAGAAGTATGTTAATGCAAGAGGTGGTTGATTTGCAGCAACAACAGCGAAGAACTGTTCACCATGCTGGAGAAGTGAATCAGAGGCTAGAATCTGCAGAGCAAAGGCAGAAACAAATGGTTTCCTTCTTGGCCAAGTTATTTCAGAATCCGGCCTTCTTGGCTCGCCTTAGGGATAAGAAGGAACAGAGACAGATAGAATCTCCAAAAGCAAGAAGGAAGTTTATCAAGCATCAACACGAAGCAGGAAATTCCGAAACTCCCAAAGGTCAGGTAGTGAGGTACCAACCTGATTGGAGAAATAGAACAGTCTCTTCTGAAACTCCGGAACTAAATCCAGTTTCCTTTGAACAGTCTCCTCAATATCTCTCACAGGACTTGGCAAGAGAAATTTCTGTTGGTGCAGAAAATCTGACTTCGCAGTTGGACAAAATCGTGTCAGATGAATTGGATGCGTTGCATGAGGCCATGCCAACTCTAGGAATTGTTGGAGAAGGATCATCAAGCTATGGACTTGAAGATCCTCTTTCCAAAGGGAAAAATGCCTTCAACCCAAGTCAAGATGTTCTTTCAGAATACTTTGTTTCCTTCCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTCCCCTGTCGGAACTGA 1365 0.4366 MKKPNEEPKGKAPAPDSPSDIEQLGMSTTGFSPLEFSSQPFSSAFDDSFDIIDDTSFMEFESFSTAMNHPPPQPPSTTTTITTTTTTCLDNVGGAVGPLPQPLECLHGNPVPPFLSKTFDLVDDPSLDPIISWGSTGASFVVWDPMEFSRLVLPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRGKKHLLKNIQRRRSTQSQQVGSYIGTSTDAGRPGLEVEIELLRKERSMLMQEVVDLQQQQRRTVHHAGEVNQRLESAEQRQKQMVSFLAKLFQNPAFLARLRDKKEQRQIESPKARRKFIKHQHEAGNSETPKGQVVRYQPDWRNRTVSSETPELNPVSFEQSPQYLSQDLAREISVGAENLTSQLDKIVSDELDALHEAMPTLGIVGEGSSSYGLEDPLSKGKNAFNPSQDVLSEYFVSFPXXXXXXXXXXXXXXXVFPCRN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03255 454 Pfam HSF-type DNA-binding 114 203 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip02g03255 454 PRINTS Heat shock factor (HSF) domain signature 165 177 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip02g03255 454 PRINTS Heat shock factor (HSF) domain signature 114 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip02g03255 454 PRINTS Heat shock factor (HSF) domain signature 152 164 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip02g03255 454 Coils Coil 230 250 - -
Aip02g03255 454 MobiDBLite consensus disorder prediction 1 37 - -
Aip02g03255 454 Gene3D - 106 204 IPR036388 -
Aip02g03255 454 ProSitePatterns HSF-type DNA-binding domain signature. 153 177 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip02g03255 454 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 101 372 - -
Aip02g03255 454 MobiDBLite consensus disorder prediction 21 37 - -
Aip02g03255 454 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 101 372 IPR027725 -
Aip02g03255 454 SMART hsfneu3 110 203 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip02g03255 454 SUPERFAMILY "Winged helix" DNA-binding domain 109 203 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03255 Aip-Chr2 109337947 109341111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03255 91 345 HSF AT5G03720 63.602 7.04e-106 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aip02g03255 HSF_DNA-bind 1.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03255 K09419 - gmx:100807323 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03255 02 109337947 109341111 Aip02g03255 02 109337947 109341111 ECH