Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03253 ATGAGCATGGAGAGTTCACGTAGACCTTTCGATAGATCGAGAGAGCCAGGGCCTAAGAAGCCTCGATTGATGGAAGACCCGAATCAGAGACCGTTTCCTCAGCGACAATTGGCTTCAGGGATTACAACGATGTCGTCAACGAGGTTCAGAGCAAACGACAGGGACGCAGAAAGCAGTGAATCCGGCCGAGGCGGTGGCGGTTACCAGCCGCAGCCGCTGCCGCAGCACCATGAGCTTGTGAATCAGTACAAGACAGCTCTTGCTGAGCTCACTTTCAATTCGAAAATGATCATTAACAATTTGACTATAATTGCAGGCGAGAATCAATCGGCTGCGAAGGCGATTGCCGCCACTATTTGTGCTAACATTCTAGAGGTTCCCAATGATCAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAACATTGGGCGGGATTATACAAAGTACTTTGCTGCCAAACTACCCGAGGTATTCTGCAAGGCATACAGACAGGTTGAACCTGCTATCCATCAAAGTATGAGACATCTTTTTGGAACTTGGGAAGGATACATTCCTCCTCAGACCCTTCAGGCTATTGAGAAGGAACTCGGCTTTACTCCACCAGTAAATGGTTCAGCTGCCTCATCTGCTACCATCAGGAGCAATTCACAGTCCCCACGTCCTCCTCATGGCATCCATGTGAATCCCAAGTATTTAGAGAGGCAACGTCTTCAGCAGTCCAGCAGGATTAAAGGAGTTGATGAAATTACTGGAGCATGTGCGAACTCCAATGAGGACCCCGAGAGGCCGGATAGAACTTTGGGTGTTGCACGACCATGGTTGGATCCTAGTGTTAGTACCCCAAGAGATGCATTTAATGATTCTGTTTTGGAAAAGAGTGTTGGTGTAACCTGTGGGGGCAATGAATATGGTTCTGATCTTTCACGGAATTTGGGCTCAGGTATGGTCAGAGCTGGTGACAAAAGTTGGTTTAAAGCAGGTGGAGTTCCGGGAACCATATCTGGCCAAAGAAATGGTTTCAGTGAGAAGCATAGTTTTTCAAATACTGAAGCACCAAAATATAATCAGCCAACACAAAACATAAATAGCATTCGGAGCAGTGTGATGTCACGTAGCTGGAAAAATTCTGAGGAAGAGGAGTACATATGGGATGAGATGAATTCTAGATCGACCGGTCTTGGTGCACCAAATGTCTCTAACAACTTGAGCAAAGATTCTTGGCCAGCAGATGATGAGAATTTTGAAGTTGAAGATCCAGTCCAAATAAGAAACCCCTATGGGGCAAATCTTGATAGAGAATTGGCCACTCTAGGCAATGAAAAGAAACGATTTTCCTCATTTCAGCGTCATCCATCAGTACCGTGGCAACTGCAGGAGCAGCACTCACTTGAAGAGTTGAATCAAAAGCCAGGTCACTCGGAAGGATTTATGTCCACTCTTAGTGGTCTGCCAGCCAATACAAATTCTGCTGTCAGGATGGGGAATCGGTCTTTCTTGCCAAATGCAACAACAGGACTGCCAGGAATTGTGGGACAACAACAACTTCACTCGATTGGAGTTGAATCCCCTTCTGGGCAGTCACCCTTGCGACAACAATCTTCACCACCACCAGTTGGTAACTTGCGAAGACCACATCAAAAGGATTTGCCAGGTTCATTTTCTTCGGCGACTCCTTTTCAGTCAAGGCATCAGCAGCAGCTTCACCTGTCTCACAATGAAGTTACCAAGAAACCTCCTCCCCTGTCTAGAGTTGCGCTAGCCAAAGAGACTCTTGAACAGTCAACCACAGGTAGTGTGGAAGCTGCTGCTCTAAACGGTGGAACATTATCCAGCATGTCCAATGCAAGTCGTCTGGATTCAAGGAATCTTCCGTCTCAATTAGGTGTTCGGCCTGCCCGCTCAGCTGGGCCTTCCCCTGCCACATTAAGTTCCTTGGTGTCTGCAATTTCAGCGCCATCTTCATTAGGTCCTTCAAATAATAGTTTATCTGCTTTGCCAAAAGTACCTGAAAGAAAGGCTGGGCAATTGACAAGGGCATCAACTCTACCACCGGCTTCCTCTGATGTCAGTGTTGCCTCTGCTCAGACAACAAGTGCCAGCAGTAATACCTCAAATCCGATTGCAAACCTTCTAAGCTCTTTAGTTGCGAAGGGTTTGATATCTGCAGAAAAAGAATCACAAACTAAGGTGACATCTGAGTTCCCAGCTCAGTTGGAAGATGAAAGAGACAGCATTACCACCAGTAGCTCTTTGCCTGTTGCTTCAGTGTCTGGTTCTGCAGCTGTTCCATTACCTTCTGCCACAGATGATGTAAATGATACTGCAAAATCCCCAACATCCTTATCTGAAACGACCAGCACAGAGATCAGAAACCTCATTGGCTTTGAGTTTAAGCCTGATGTAATCCGAGAAGTGCATCCACCTGTCATTAAAGGATTATTTGATGATCTCCCTCATCATTGTGACATTTGTGGCCGTAGGCTTAAATTCCAAGAGCAGTTTAATAGACACTTGGAGTGGCATGCCACAAGGGGGAAAAATGATCTAATTAGGGCATCAAGAGGATGGTATCCGAAGTCAATTGATTGCATTGTTAGCAAGGGTGAATCTTCATCCACGTCTGAGTTTTCCGGATCTGTTGATACATACAGCAAGGAAACAAGAAGCACTCAAGAGGACTCGATGGTTCAAGCAGATGAAAGCCAATGCTTGTGTGTGTTGTGTGGTGAGGTATTTGAAGATTTCTACTGTCAAGAAAGTGGTGAGTGGATGTTCAAAGGGGCCGTTGACATGACTAACTCAGATAGTGAGTTGGGAAATAGAAATGCTAGTACTACAAGGGGTCCCATTATTCATGCAAGGTGCTTCTCAGGAAACTCTATATCCAGTTTCGTCAAGATGGAACAAGATTAA 2922 0.4565 MSMESSRRPFDRSREPGPKKPRLMEDPNQRPFPQRQLASGITTMSSTRFRANDRDAESSESGRGGGGYQPQPLPQHHELVNQYKTALAELTFNSKMIINNLTIIAGENQSAAKAIAATICANILEVPNDQKLPSLYLLDSIVKNIGRDYTKYFAAKLPEVFCKAYRQVEPAIHQSMRHLFGTWEGYIPPQTLQAIEKELGFTPPVNGSAASSATIRSNSQSPRPPHGIHVNPKYLERQRLQQSSRIKGVDEITGACANSNEDPERPDRTLGVARPWLDPSVSTPRDAFNDSVLEKSVGVTCGGNEYGSDLSRNLGSGMVRAGDKSWFKAGGVPGTISGQRNGFSEKHSFSNTEAPKYNQPTQNINSIRSSVMSRSWKNSEEEEYIWDEMNSRSTGLGAPNVSNNLSKDSWPADDENFEVEDPVQIRNPYGANLDRELATLGNEKKRFSSFQRHPSVPWQLQEQHSLEELNQKPGHSEGFMSTLSGLPANTNSAVRMGNRSFLPNATTGLPGIVGQQQLHSIGVESPSGQSPLRQQSSPPPVGNLRRPHQKDLPGSFSSATPFQSRHQQQLHLSHNEVTKKPPPLSRVALAKETLEQSTTGSVEAAALNGGTLSSMSNASRLDSRNLPSQLGVRPARSAGPSPATLSSLVSAISAPSSLGPSNNSLSALPKVPERKAGQLTRASTLPPASSDVSVASAQTTSASSNTSNPIANLLSSLVAKGLISAEKESQTKVTSEFPAQLEDERDSITTSSSLPVASVSGSAAVPLPSATDDVNDTAKSPTSLSETTSTEIRNLIGFEFKPDVIREVHPPVIKGLFDDLPHHCDICGRRLKFQEQFNRHLEWHATRGKNDLIRASRGWYPKSIDCIVSKGESSSTSEFSGSVDTYSKETRSTQEDSMVQADESQCLCVLCGEVFEDFYCQESGEWMFKGAVDMTNSDSELGNRNASTTRGPIIHARCFSGNSISSFVKMEQD 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03253 973 MobiDBLite consensus disorder prediction 206 225 - -
Aip02g03253 973 MobiDBLite consensus disorder prediction 252 277 - -
Aip02g03253 973 MobiDBLite consensus disorder prediction 553 575 - -
Aip02g03253 973 Gene3D - 73 200 IPR008942 -
Aip02g03253 973 MobiDBLite consensus disorder prediction 1 74 - -
Aip02g03253 973 MobiDBLite consensus disorder prediction 612 626 - -
Aip02g03253 973 MobiDBLite consensus disorder prediction 682 709 - -
Aip02g03253 973 MobiDBLite consensus disorder prediction 676 709 - -
Aip02g03253 973 SUPERFAMILY ENTH/VHS domain 74 205 IPR008942 -
Aip02g03253 973 MobiDBLite consensus disorder prediction 522 583 - -
Aip02g03253 973 MobiDBLite consensus disorder prediction 728 786 - -
Aip02g03253 973 ProSitePatterns Zinc finger C2H2 type domain signature. 824 844 IPR013087 -
Aip02g03253 973 Pfam CID domain 84 194 IPR006569 -
Aip02g03253 973 MobiDBLite consensus disorder prediction 744 759 - -
Aip02g03253 973 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 540 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aip02g03253 973 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 541 970 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aip02g03253 973 CDD CID_Pcf11 80 196 - -
Aip02g03253 973 MobiDBLite consensus disorder prediction 1 26 - -
Aip02g03253 973 MobiDBLite consensus disorder prediction 206 231 - -
Aip02g03253 973 MobiDBLite consensus disorder prediction 32 49 - -
Aip02g03253 973 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 540 - -
Aip02g03253 973 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 541 970 - -
Aip02g03253 973 SMART 558neu5 78 200 IPR006569 -
Aip02g03253 973 MobiDBLite consensus disorder prediction 612 644 - -
Aip02g03253 973 MobiDBLite consensus disorder prediction 522 542 - -
Aip02g03253 973 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03253 Aip-Chr2 109327086 109333722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03253 796 958 C2H2 Transcription Factor Family AT4G04885 38.554 1.57e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip02g03253 CID 1e-13 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03253 K14400 - gmx:100807857 1132.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03253 02 109327086 109333722 Aip02g03253 02 109327086 109333722 ECH
Aip06g01925 06 74390654 74396940 Aip02g03253 02 109327086 109333722 PCT