Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03249 ATGGAAGATCATCATCACCAACTTCATCATCAGCAGAACCACCACTACGGTTGTTTAACCGATCTGTTAATGAACAACGCTCCTATGCACCAATCCCAACCACCGCAACCACCAATAACACTAGGCGGAGCCACCAGCCAGCAGCAGCAGCAGCAGCAGCACCGCAACCTGCCGCCGTTGCCGGAGACAACGATGACGATGTTTGAGATGATGGGAGCGGCACGTGGGGTGGTTATGAATAGCGAGTTGGCATCAACAACGAGAGGATCAGGTGTGGGAGGGTGCATGGGTGGGGATGCATCCTCAAACAACGGAAGATGGCCAAGACAAGAGACTCTCACTCTTCTTGAGATCAGATCTAAGCTTCACCCTAAATTCAAAGATGCTAATCACAAAGGTCCCTTATGGGAACAAGTCTCCAGGATAATGTTAGAAGAACATGGATACCAAAGGAGTGGAAAGAAATGCAGGGAGAAGTTTGAGAATCTGTACAAATATTATAAGAAGACAAAGGAAGGAAAAGCAGCAAGACAAGATGGGAAGCATTATAGGTTCTTTCGCCAACTTGAAGCCTTGTTTGGAGACAATAACAACAATTCCAACAACTTTGTTACCAACAACAACCTTATTAATTTACAAACAAATCAAGACAAGTTTCATAATCATCATTATTCTCATCATCATCACAATAATAATAATATTAATAATAATAGTGTAAGCCTCATCACAAACTCCACTAGTGAGTTTGACACATCATCATCAGAGACTGATGATGATGATGAATCGAGGAAGAGGAAGAGGAGGAGGTGGAAGATGAAGATGAAGATGAAGGAGTTCATTGACTCACAAATGAGCAAGCTTGTGAAGAAGCAAGAGGAATGGCTTGAGAAGCTAGTGAAGACAATGGAAGAGAAAGAGAAGGAAAGAGGGGAGAGAGAAGAAGAATGGAGAAGAGAAGAGGCAACTAGGTTGGAGAAGGAGCACATGTTTTGGGCCAAAGAAAGAGCATGGATTGAAGCAAGGGATGCTGCATTAATGGATTCTTTTAACAAGTTGACAAGGAGAAGGGAAATCATCAAGGCTGAAGAACAAGAACAAGATCAAGAAGCTTCTCATCATCATCTTCATCATCATCAGGATGATGGTGTGATGATGATGATGATGATGGGAGACGAAGAAATTATCAAAAATCATAACGAGGATAACAACGAAGATATTAGAGAAAAATACATGTATGTTTCTGAAGCACATTTAATACATGCACCAGAAACATCTACAGCTACTCATTTTCAGTTGTAA 1299 0.4172 MEDHHHQLHHQQNHHYGCLTDLLMNNAPMHQSQPPQPPITLGGATSQQQQQQQHRNLPPLPETTMTMFEMMGAARGVVMNSELASTTRGSGVGGCMGGDASSNNGRWPRQETLTLLEIRSKLHPKFKDANHKGPLWEQVSRIMLEEHGYQRSGKKCREKFENLYKYYKKTKEGKAARQDGKHYRFFRQLEALFGDNNNNSNNFVTNNNLINLQTNQDKFHNHHYSHHHHNNNNINNNSVSLITNSTSEFDTSSSETDDDDESRKRKRRRWKMKMKMKEFIDSQMSKLVKKQEEWLEKLVKTMEEKEKERGEREEEWRREEATRLEKEHMFWAKERAWIEARDAALMDSFNKLTRRREIIKAEEQEQDQEASHHHLHHHQDDGVMMMMMMGDEEIIKNHNEDNNEDIREKYMYVSEAHLIHAPETSTATHFQL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03249 432 CDD GT1 106 171 - -
Aip02g03249 432 ProSiteProfiles Myb-like domain profile. 99 164 IPR001005 -
Aip02g03249 432 Coils Coil 288 315 - -
Aip02g03249 432 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 70 390 - -
Aip02g03249 432 Pfam Myb/SANT-like DNA-binding domain 106 192 IPR044822 -
Aip02g03249 432 Gene3D - 107 169 - -
Aip02g03249 432 MobiDBLite consensus disorder prediction 26 60 - -
Aip02g03249 432 PANTHER - 70 390 - -
Aip02g03249 432 MobiDBLite consensus disorder prediction 26 61 - -
Aip02g03249 432 MobiDBLite consensus disorder prediction 247 267 - -
Aip02g03249 432 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03249 Aip-Chr2 109288923 109292206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03249 106 358 Trihelix Transcription Factor Family AT5G03680 54.887 1.47e-88 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aip02g03249 Myb_DNA-bind_4 1.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03249 - - aip:107628057 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03249 02 109288923 109292206 Aip02g03249 02 109288923 109292206 ECH
Aip06g01957 06 79213187 79215181 Aip02g03249 02 109288923 109292206 PCT