Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03248 ATGCATTCTACTTCTGCTTCTACTTCTACTGGCCGTCACCCCGTGTATCGCGGAGTGAGGCGTAGAAGTAGTGGCAAATGGGTGTCGGAAATTCGGGAGCCGAAGAAGCCTAATAGGATTTGGTTAGGGACATACCCTACTCCAGAAATGGCTGCGGTTGCATATGATGTCGCCGTCCTTGCCCTAAAAGGCAAAGACGCCGAGTTAAACTTCCCTAACTCGGCTTCTTCGCTCCCGGTTCCGGCTACCTTATCCCCACGTGACATTCAAATGGCCGCGGCTAGTGCTGCCGCGGCGGCCGGAGCAGCAAAAGATGCCCTAAATGCTGAAGGATCAAGTTCAAGCCAAGGGAATATTAATAAAAGCAATGAAAATAATAATAATAATAATAATAATGTTCCTTCATCATCAATGGCACATGATTTTGTGGATGAGGATTTGATCTTTGACATGCCTAATGTTCTTGTGAACATGGCAGAAGGAATGCTTCTTAGTCCTCCTCCTTTTGACATTGGTGGTGGTGAAGATGAACCAGAAAACATGGATGATGAGCCAAGCCTGTGGAATTTCCCTTAA 576 0.4653 MHSTSASTSTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTYPTPEMAAVAYDVAVLALKGKDAELNFPNSASSLPVPATLSPRDIQMAAASAAAAAGAAKDALNAEGSSSSQGNINKSNENNNNNNNNVPSSSMAHDFVDEDLIFDMPNVLVNMAEGMLLSPPPFDIGGGEDEPENMDDEPSLWNFP 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03248 191 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Aip02g03248 191 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Aip02g03248 191 Pfam AP2 domain 14 64 IPR001471 GO:0003700|GO:0006355
Aip02g03248 191 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Aip02g03248 191 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Aip02g03248 191 MobiDBLite consensus disorder prediction 108 138 - -
Aip02g03248 191 MobiDBLite consensus disorder prediction 166 191 - -
Aip02g03248 191 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Aip02g03248 191 MobiDBLite consensus disorder prediction 1 28 - -
Aip02g03248 191 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Aip02g03248 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 4 191 - -
Aip02g03248 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 191 - -
Aip02g03248 191 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03248 Aip-Chr2 109265050 109265625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03248 1 191 AP2-EREBP Transcription Factor Family AT2G36450 60.000 2.51e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip02g03248 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03248 - - vvi:100261339 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03248 02 109265050 109265625 Aip02g03248 02 109265050 109265625 ECH