Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03247 ATGCAAAAAAGAAAGGCAGGGAGGAAGAAATTCCAAGAGACAAGGCACCCTATTTACAAAGGTGTGAGGCAAAGGAATGGAAAATGGGTATGTGAGCTTAGACAACCAAACAACAAAACTAGGGTTTGGCTTGGAACTTTTTCTCATCCTCAAATGGCGGCTATAGCCCATGATGTCGCCGCTTTGGCCTTCCGGGGCGAAAATGCTTCCCTAAACTTTCCTCAGTCGGCCGCCTCGCTGCCTAGACTGAATGCTGAAACCACTCCTCTCAAAAGCATCCAGATAACTGCGACGCAGGTCGCGAACAATCACTTTGTTGAAGGCAGAGAAGAGATCATGAGTATCCTTGGAAGTAATGATGCTTCTTCTCATGAGGAGGAGTTGTCTTCGGATTGTAGTTTTGGAGAAGATTCTAGAAGCTTCTATTGGGATGAAGAGGAAGTGTTTAACATGCCAGGGTTGATGAATAGCTTGGCTGAAGCCTTGATTATAACTCCACCGGCTTTGGAAAGAGGCTTCAATTGGGTTGGTGTAGAAACTACCATGGATTTGACTCTATGGGGCGATTAA 570 0.4561 MQKRKAGRKKFQETRHPIYKGVRQRNGKWVCELRQPNNKTRVWLGTFSHPQMAAIAHDVAALAFRGENASLNFPQSAASLPRLNAETTPLKSIQITATQVANNHFVEGREEIMSILGSNDASSHEEELSSDCSFGEDSRSFYWDEEEVFNMPGLMNSLAEALIITPPALERGFNWVGVETTMDLTLWGD 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03247 189 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Aip02g03247 189 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Aip02g03247 189 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700|GO:0006355
Aip02g03247 189 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Aip02g03247 189 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Aip02g03247 189 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Aip02g03247 189 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Aip02g03247 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 187 - -
Aip02g03247 189 SMART rav1_2 18 80 IPR001471 GO:0003700|GO:0006355
Aip02g03247 189 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 8 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03247 Aip-Chr2 109259618 109260187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03247 3 187 AP2-EREBP Transcription Factor Family AT4G25470 47.059 8.42e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip02g03247 AP2 8.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03247 - - aprc:113870892 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03247 02 109259618 109260187 Aip02g03247 02 109259618 109260187 ECH