Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03197 ATGTCTATAAACCACTACTCTTCTTCCCCTATGGACCTCCAAGAAACGACACCGTTGTGGTGGACTCAACAACCACAACCTCCTTCTTCCTACAACAATAATATTCATAATTCCCAAAACACCCCTCGCTTCAACCTCAACAACGAAGAAACCGACACCGCCACTACGTCACAAGAAGGAGACGAAGAAGAAGAAGAAGAGAATCTTCCAGAACCAATCCAACAAGACGATAATAATAACCACCAACAACATAACGAGAGAATGTTCGAGAAGCCGTTAACTCCAAGCGACGTTGGAAAGCTTAACCGTCTCGTCATCCCAAAGCAACACGCCGAGAAGTACTTCCCTCTAACTGCCTCCTCCGCTACTGAGTCAGCCACCGAGTGCAAGGGTTTGTTACTGAGTTTCGAGGACGAGTCAGGAAAGTGTTGGCGATTCCGTTATTCGTATTGGAACAGCAGCCAGAGCTATGTGCTAACCAAAGGATGGAGCCGTTACGTTAAGGACAAGCGTCTCGACGCCGGCGACGTCGTTTCCTTCGAGCGCCACCGCGCCGACTCTCAGAGGCTCTTTATTCGCTGGAGGCGCCGATCTTCTCCGCTGGCGCAAGTTAGCAGAACGGCTCACGCTGGTGGCGCTGATGTGAATAATGACAAGAGTGGTGTAGCGTGGACTAGCGGATTCTATTGTGCGCACCCTCCTTATCCTGCGCATCCTCTTCATAACCAACACTTAACATATCCACAACAACATGAGGGGATAGGGTCCCAAGGGAAGAACCAAAGGATGAGACCAGTTGGAAACTGTTCAAGTTCAAGTTCGAAGGTACTTAGGTTGTTTGGGGTGAACATGGAATGCCAAACTCAACATGATGATGATGATTCTCAACCTTCAACAACAAAAGAGGGTACTAGTAATTCAGATACTACCCACCATTTCTACCACCATAATTATTATCATCAACCTTCTAATAATTCTCACCCTAATCACAATCACATGTTACCTCATCAACAATCATATTACTATTAG 1029 0.4674 MSINHYSSSPMDLQETTPLWWTQQPQPPSSYNNNIHNSQNTPRFNLNNEETDTATTSQEGDEEEEEENLPEPIQQDDNNNHQQHNERMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLTASSATESATECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVSFERHRADSQRLFIRWRRRSSPLAQVSRTAHAGGADVNNDKSGVAWTSGFYCAHPPYPAHPLHNQHLTYPQQHEGIGSQGKNQRMRPVGNCSSSSSKVLRLFGVNMECQTQHDDDDSQPSTTKEGTSNSDTTHHFYHHNYYHQPSNNSHPNHNHMLPHQQSYYY 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03197 342 MobiDBLite consensus disorder prediction 288 342 - -
Aip02g03197 342 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 36 308 - -
Aip02g03197 342 ProSiteProfiles B3 DNA-binding domain profile. 89 198 IPR003340 GO:0003677
Aip02g03197 342 SMART B3_2 89 198 IPR003340 GO:0003677
Aip02g03197 342 Pfam B3 DNA binding domain 89 198 IPR003340 GO:0003677
Aip02g03197 342 SUPERFAMILY DNA-binding pseudobarrel domain 84 198 IPR015300 -
Aip02g03197 342 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 308 IPR044800 GO:0003700
Aip02g03197 342 MobiDBLite consensus disorder prediction 299 342 - -
Aip02g03197 342 CDD B3_DNA 87 188 IPR003340 GO:0003677
Aip02g03197 342 Gene3D - 77 206 IPR015300 -
Aip02g03197 342 MobiDBLite consensus disorder prediction 21 84 - -
Aip02g03197 342 MobiDBLite consensus disorder prediction 55 72 - -
Aip02g03197 342 MobiDBLite consensus disorder prediction 250 272 - -
Aip02g03197 342 MobiDBLite consensus disorder prediction 21 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03197 Aip-Chr2 108785965 108788337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03197 81 300 RAV Transcription Factor Family AT5G06250 52.444 2.94e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip02g03197 B3 4.7e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03197 - - gmx:100795470 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03197 02 108785965 108788337 Aip02g03197 02 108785965 108788337 ECH