Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03156 ATGGATAATGAAATTGAAGTTCCTCAATATTTCATATGTCCAATTTCACTTCAAATCATGAAGGATCCTGTGACTGCCATAACAGGAATCACATATGATAGAGAAAGCATTGAGAAATGGCTTTTCAAGAACAAGAACACAACATGTCCAGTTACCAAAATGCCCCTACCAAATGATTCTGATCTTACACCAAACCATACCCTTCGCCGTTTGATCCAAGCATGGTGCACTCAAAATTCTTCACTGGGAATTGATAGAATCCCAACACCAAAGCCCCCACTTAACAAAGTTCAAGTTTTGAAGCTCCTTAAGGATCTTAAGGACCCAAGATTGAAGATCAAGAGTTTAAGGCAATTGGAGCTTCTTGCAACTGAAAATGAGAGGAACAAGAAGTGCTTGCTTGATTCTGGTGTCCCAAAAGCCATGATCATGTTCATATTGGATTGTTACAAAAAGGGTATCAATCAAATTGGTGAAGGGATTGAAGAAGCTCTTAGTTTGTTACAATTTGTTAAGGTTTCTTCCGAGGATGTTAAGATTCTTATGTCCGAGAATGTTTTTTATTCGGTGTTGGATTCTCTAACATGGCTTCTGGGGTGCGATTTTTCGGAGAATTCGGCGACTGTAAAATCACAAGCTGTTCTAGTGATCAAGAACTTGATCCAAAGGGGTGATTCAAGTGTTATTCAGAGGCTTAAATTTGAGTTCTTTGAGAAGATTGTGAAGGTTTTGAGAAACGGTGTTGTAACACAGCAAGGTATTAGCGGCGCTTTGAAAGTGTTGCTAAGTGCTTGTGCGTATGGAAGAAACAGGATCATGATGGTGGAATGTGGTGCAGTTTTTGAGATGATTGAGATTGAAATGAGAACACCTGAGAAGATAATCACTGAATTAACAATGTCTATTCTATTTCATCTATGTTCATGTGCTAGTGGAAGAGCTCAATTCTTGTGTCACAAAGGTTCAATGGCGGTTTTGACTGAAAGGATTTTGAAGGTTTCAGCGGCGGTTGATGATAGAGCTATAATTATTCTATCATTGATATCCAAATTCTCTGCTACAAATTTGGTGCTTCAAGAGATGTTGAAGGTTGGAACTGTTGCAAAGCTTTGTTTGGTTCTTCAGAGTGATCATGCAAAGTACATCAAAGAAAAAGCAATGGAAATTATTAAGAATCATTCTGTGGTTTGGAGGAACTCTCCTTGTTTTCCTGATAGGTCTTCTTTTTTTGGCAAGTTTGCATAA 1245 0.3823 MDNEIEVPQYFICPISLQIMKDPVTAITGITYDRESIEKWLFKNKNTTCPVTKMPLPNDSDLTPNHTLRRLIQAWCTQNSSLGIDRIPTPKPPLNKVQVLKLLKDLKDPRLKIKSLRQLELLATENERNKKCLLDSGVPKAMIMFILDCYKKGINQIGEGIEEALSLLQFVKVSSEDVKILMSENVFYSVLDSLTWLLGCDFSENSATVKSQAVLVIKNLIQRGDSSVIQRLKFEFFEKIVKVLRNGVVTQQGISGALKVLLSACAYGRNRIMMVECGAVFEMIEIEMRTPEKIITELTMSILFHLCSCASGRAQFLCHKGSMAVLTERILKVSAAVDDRAIIILSLISKFSATNLVLQEMLKVGTVAKLCLVLQSDHAKYIKEKAMEIIKNHSVVWRNSPCFPDRSSFFGKFA 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03156 414 SUPERFAMILY ARM repeat 99 392 IPR016024 -
Aip02g03156 414 CDD RING-Ubox_PUB 11 53 IPR045210 -
Aip02g03156 414 Pfam U-box domain 7 80 IPR003613 GO:0004842|GO:0016567
Aip02g03156 414 PANTHER WDSAM1 PROTEIN 4 406 IPR045185 GO:0061630
Aip02g03156 414 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 4 406 - -
Aip02g03156 414 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Aip02g03156 414 Gene3D - 96 399 IPR011989 -
Aip02g03156 414 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Aip02g03156 414 SUPERFAMILY RING/U-box 5 85 - -
Aip02g03156 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03156 Aip-Chr2 108209859 108211136 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03156 2 403 U-box Gene Family AT3G11840 41.892 3.37e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03156 - - lja:Lj0g3v0014579.1 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03156 02 108209859 108211136 Aip02g03156 02 108209859 108211136 ECH