Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03155 ATGGATCATGGAATTGATGTTCCACCATTTTTTGTTTGTCCAATTTCATTGGAGATCATGAAGGATCCGGTGATTGTATCCACAGGAATCACCTATGATAGAGAGAGCATTGAGAAGTGGTTATTGAAGAACAAGACATGCCCGGTGACCAAGCAAACCCTTGAGATTTTAGACCTAACTCCTAATCACACTCTTAGGAGATTGATTCAAGCATGGTGCACCTTGAATGCTTCTCATGGAGTTGAAAGAATTCCAACACCAAAGCCTCCGGTCAATAAAGAACAGGTATCAAAGCTCATCAAAGATGCTTCTTCTAATCATCAAGATTCTTCATTGCTTTCTCAGTGCCTTATGAGTCTTAAATCGATGGCGGCCGAGAGCGAATCGAACCGGAGATGCATTGAATCAGCTGGAGCTGTTGAGTTCTTAGCTTCAATAATTGTGATGAATCATAGTTATGATTCAATTGAGGTTAGTTCTGATGGAGATGAAGGTTTCGACACGAAATCGGGTGTTTCGGATGAAGCTTTGAGCATACTACACAATCTTCATTTGTCAGAAAATGGTTTGAAGACCTTATTAGGGTTCAAAGATGGAATCTTTGTTGATTCCTTGACAAGGGTCTTGCAAAGAGGAATCTATGAATCAAGGGCTTATGCAGTTTTCTTGTTGAAATCCATGTCCCAAGTTGCAAACCCTAATCAGCTAGTGAATCTTAGAAATGAGTTGTTTGTGGAATTGGTTCAAGTTCTAAAGGATCAAATCTCACAAAAAGCTTCAAAGGAAACACTACAAACCCTAATTGAGATTTGTCCATGGGGAAGAAACCGGATCAAAGCGGTCGAATCCGGGGCGATCCATGTCCTAATTGAGCTTCTTCTCGATTGCAAAGAGAAGAAGCCATGTGAAATGATGATGGTGGTTTTGGATCTTCTATGCCAAACTGCTGATGGAAGAGCTGAGCTTCTCGGCCACGCCGCCGGCGTGGCCGTCGTTTCGAAGAAGATTCTTAGGGTTTCAACAATGGTGAATGATAGGGCTGTGAAGATTTTGCTCTCAATTGCAAGGTACTCAGCAACACAAAGTGTTGTTCAAGAAATGTTGCTAATTGGTGTTGTTGCTAAACTTTGTTTGGTTCTTCAAGTTGATAGTGGAAACAAGGCTAAGGAGAAAGCAAGGGAAATTCTCAAGCTTCATTCTAAGACATGGAGGAATTCTCCTTGTTTACCTACCAATTTTCTTTCAGCTTACCCTACAAATTAG 1263 0.4109 MDHGIDVPPFFVCPISLEIMKDPVIVSTGITYDRESIEKWLLKNKTCPVTKQTLEILDLTPNHTLRRLIQAWCTLNASHGVERIPTPKPPVNKEQVSKLIKDASSNHQDSSLLSQCLMSLKSMAAESESNRRCIESAGAVEFLASIIVMNHSYDSIEVSSDGDEGFDTKSGVSDEALSILHNLHLSENGLKTLLGFKDGIFVDSLTRVLQRGIYESRAYAVFLLKSMSQVANPNQLVNLRNELFVELVQVLKDQISQKASKETLQTLIEICPWGRNRIKAVESGAIHVLIELLLDCKEKKPCEMMMVVLDLLCQTADGRAELLGHAAGVAVVSKKILRVSTMVNDRAVKILLSIARYSATQSVVQEMLLIGVVAKLCLVLQVDSGNKAKEKAREILKLHSKTWRNSPCLPTNFLSAYPTN 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03155 420 Gene3D - 76 402 IPR011989 -
Aip02g03155 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 4 418 - -
Aip02g03155 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 75 IPR013083 -
Aip02g03155 420 ProSiteProfiles U-box domain profile. 6 79 IPR003613 GO:0004842|GO:0016567
Aip02g03155 420 Pfam U-box domain 7 74 IPR003613 GO:0004842|GO:0016567
Aip02g03155 420 SUPERFAMILY ARM repeat 96 387 IPR016024 -
Aip02g03155 420 SMART Ubox_2 10 72 IPR003613 GO:0004842|GO:0016567
Aip02g03155 420 CDD RING-Ubox_PUB 11 52 IPR045210 -
Aip02g03155 420 PANTHER WDSAM1 PROTEIN 4 418 IPR045185 GO:0061630
Aip02g03155 420 SUPERFAMILY RING/U-box 5 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03155 Aip-Chr2 108189110 108190806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03155 1 418 U-box Gene Family AT3G52450 55.581 3.60e-171 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03155 - - gmx:100809123 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03155 02 108189110 108190806 Aip02g03155 02 108189110 108190806 ECH