Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03146 ATGAACGACCTATTTTCCGGTTCCTTCTCCCGCTTGCGCAACGAGCGTACTTCACCGGACCGCCACCACGTCATCGAGATGTCTGCCGTCACGCCGGACGCTGCAGGCTCGGGCGGCGTCCACCTCGACAAGTTCTTCGACGATGTGGAAGGCGTTAAAGAGGAGCTTCGCGAAGTCGAGCGTCTTCTCCAGAGTCTCCAGAGCAGCCACGAGCAGAGCAAGACGCTTCACAACGCCGCCGCCGTGCGTGACCTCCGGTCGAGAATGGACGCCGACGTATCGGCGGCGCTGAAGAAGGCGAAGGTGATCAAGCTCCGCCTCGAGGCGCTGGACCGGTCCAACGCTGCGAACCGGAACCTGCCGGGTTGCGGACCGGGTTCGTCATCGGACCGGACGAGAACTTCGGTGGTTAACGGTTTGAAGAAGAAGCTGAAGGATTCGATGGAGAGCTTCAACGAATTGCGGCAGCAGATCTCGGCGGAGTATAGGGAGACGGTGCAGCGGCGGTACTTCACCGTCACCGGCGAGAATCCCGATGAGAAGACGCTCGATCTCTTGATCTCTACTGGTGAGAGTGAGACATTCCTTCAGAAAGCCATTCAAGAACAAGGCAGGGGAAGAATTCTTGACACCATCAATGAAATTCAAGAAAGGCATGATGCTGTCAAAGAGATCGAGAAGAATCTCAAGGAGTTGCACCAGGTGTTCCTTGACATGGCAGTGCTGGTGCAAACACAGGGCGAGCAACTGGACGATATTGAGAGTCACGTGGCGCGAGCCCATTCGTTTGTGCACACCGGAACAGAGCGGTTGCAAACTGCAAGAAAGCACCAGAAGAACACCAGGAAATGGACCTGTTTTTGTATCATACTGCTTCTAGCGATTATCTTGGTAGTGTTGCTAGTGGTTCTGAAACCGTGGCAACATAATGGCAGCAGTGGTGGTGGTAGTCAGCCTGCTCCGGCTCAAACACCTCCACCACCACCTCCTGCCGGTGCTTAA 1002 0.5569 MNDLFSGSFSRLRNERTSPDRHHVIEMSAVTPDAAGSGGVHLDKFFDDVEGVKEELREVERLLQSLQSSHEQSKTLHNAAAVRDLRSRMDADVSAALKKAKVIKLRLEALDRSNAANRNLPGCGPGSSSDRTRTSVVNGLKKKLKDSMESFNELRQQISAEYRETVQRRYFTVTGENPDEKTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIEKNLKELHQVFLDMAVLVQTQGEQLDDIESHVARAHSFVHTGTERLQTARKHQKNTRKWTCFCIILLLAIILVVLLVVLKPWQHNGSSGGGSQPAPAQTPPPPPPAGA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03146 333 MobiDBLite consensus disorder prediction 311 333 - -
Aip02g03146 333 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 7 312 - -
Aip02g03146 333 CDD SynN 42 199 IPR006011 GO:0016020
Aip02g03146 333 Pfam Syntaxin 44 247 IPR006011 GO:0016020
Aip02g03146 333 SMART tSNARE_6 207 274 IPR000727 -
Aip02g03146 333 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 212 274 IPR000727 -
Aip02g03146 333 ProSitePatterns Syntaxin / epimorphin family signature. 218 257 IPR006012 GO:0005484|GO:0006886|GO:0016020
Aip02g03146 333 Coils Coil 137 161 - -
Aip02g03146 333 Pfam SNARE domain 248 300 IPR000727 -
Aip02g03146 333 CDD SNARE_syntaxin1-like 211 273 - -
Aip02g03146 333 SUPERFAMILY t-snare proteins 40 267 IPR010989 GO:0016020|GO:0016192
Aip02g03146 333 Coils Coil 212 232 - -
Aip02g03146 333 Gene3D - 209 305 - -
Aip02g03146 333 Coils Coil 42 72 - -
Aip02g03146 333 SMART SynN_4 37 163 IPR006011 GO:0016020
Aip02g03146 333 Gene3D - 40 172 - -
Aip02g03146 333 PANTHER SYNTAXIN 7 312 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03146 Aip-Chr2 108061037 108063276 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03146 34 331 SNARE and Associated Proteins AT3G11820 73.616 1.40e-153 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03146 K08486 - gmx:100809258 484.182