Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03144 ATGGACGCTGACGTGGCAATAGCACTAAAAAAGGCCAAGCTTGTCAAGGTCCGACTCGAGGCACTGGACAGGTCCAACGCAGCAAGCCGAAGCTTGCCTGGTGCTGGACCTGGGTCTTCCTCGGATCGGACCAGGACATCCGTGGTGAGTGGATTGAGGAAGAAGTTGAAAGATTCCATGGACAGCTTCAACAACCTTAGACAACAAATATCCTCAGAGTACAGAGAGACCGTACAACGTAGATACTATACTGTCACTGGAGAGAATCCTGATGAAAAAACCGTTGATCTTCTCATCTCTACTGGTGAGAGTGAAACCTTTTTACAAAAAGCAATTCAGCAACAGGGGAGAGCCACAATCATGGACACAATCCAAGAGATTCAAGAGAGGCATGACACAGTTATGGAGATAGAGAGGAGCCTCAATGAGCTTCACCAAGTGTTCTTGGACATGGCTGTTTTGGTCCAATCACAAGGTGAGCAAATAGATGACATAGAGAACCACGTGGCGAGAGCTAATTCGTATGTCCGCGGCGGGGTCCAGCAACTCCAGGTTGCAAGGAAGCACCAGAAGAATACCCGGAAGTGGACCTTAATTGCCATCATAATATTGATCATTATCATATTGATTATAGTTCTTCCTATTGTTTTAAAAAATTGA 660 0.4591 MDADVAIALKKAKLVKVRLEALDRSNAASRSLPGAGPGSSSDRTRTSVVSGLRKKLKDSMDSFNNLRQQISSEYRETVQRRYYTVTGENPDEKTVDLLISTGESETFLQKAIQQQGRATIMDTIQEIQERHDTVMEIERSLNELHQVFLDMAVLVQSQGEQIDDIENHVARANSYVRGGVQQLQVARKHQKNTRKWTLIAIIILIIIILIIVLPIVLKN 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03144 219 SMART tSNARE_6 119 186 IPR000727 -
Aip02g03144 219 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 124 186 IPR000727 -
Aip02g03144 219 MobiDBLite consensus disorder prediction 28 49 - -
Aip02g03144 219 ProSitePatterns Syntaxin / epimorphin family signature. 130 169 IPR006012 GO:0005484|GO:0006886|GO:0016020
Aip02g03144 219 PANTHER SYNTAXIN 1 214 IPR045242 -
Aip02g03144 219 CDD SynN 1 111 IPR006011 GO:0016020
Aip02g03144 219 Pfam SNARE domain 160 212 IPR000727 -
Aip02g03144 219 Gene3D - 1 84 - -
Aip02g03144 219 MobiDBLite consensus disorder prediction 32 47 - -
Aip02g03144 219 SUPERFAMILY t-snare proteins 5 179 IPR010989 GO:0016020|GO:0016192
Aip02g03144 219 CDD SNARE_syntaxin1-like 123 184 - -
Aip02g03144 219 Pfam Syntaxin 1 159 IPR006011 GO:0016020
Aip02g03144 219 Gene3D - 110 217 - -
Aip02g03144 219 PANTHER SYNTAXIN-121 1 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03144 Aip-Chr2 108057338 108058611 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03144 1 198 SNARE and Associated Proteins AT3G11820 76.263 2.64e-113 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03144 K08486 - gmx:100808718 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03144 02 108057338 108058611 Aip02g03144 02 108057338 108058611 ECH