Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03123 ATGGGTATGGAAACTGCATATCTGAAAGAACATGAAGGAATTGTTCACAATTCTGTTGGACAGCTGTCATCAGCAGCAGCAGGTTCTTCATGGTGGAGTATTAGTGCCTTTGGATCTCATCAAAATCAATCATCAGTTTATGGAGACTCTTCTAATTATAATAATAATAATAATAACCAAATTATGAAACCATTTTCATTGGAGCTTCATAATAATAATAATTACATAGACCAACTTGCTTCTTCTTCCACTAATAAGCAACAACAATTCTTGGATAAACAATTTACCATCTTTCCAGAAGATTGCAAAATTTCAGGGGAATCCCAAAAGTCTCAAGCCACATTATCTTTGCAGCCATCAAATGCTGACCCTAGGAACCGTTTTGAGCTTGGATTCACTCAGCCTATGATATGTGCAAAATATCCTTACATGGATCAATTTTATGGACTCTTCTCAGCTTATGCACCTCAAATTTCGGGGCGTATAATGCTGCCACTAAACTTGACATCAGATGATGGACCAACTTACGTGAATGCTAAGCAATACCATGGAATCATAAGGCGTAGGCAGTCACGTGCCAAAGCTGTTCTTGCCAATAAACTCATCAAACGTCGCAAGCCATATATGCATGAATCGCGCCATCTCCACGCGATGCGACGGCCAAGAGGATGTGGTGGCAGGTTTTTGAACACAAGAAACTCTGCCACCAACAATGGAAATGGTAAGAGTGGAAGTGAAGCAAACAAAAAAACACTTGGCCATCAACTACATTCTAGTGGTTCTCAGAGTTCTGAAGTCCTACAATCCTCGGCCGGAACCTTGAATTCGTTGAAGGAACCAAATGGAAGCAGTCCAAACATTTCATTAGAGGTGACAAGCATGTACTCATCAAGAGGAGGAATTGATGGATTTGCCATCAATCACATTGGAACTCCTATGCACTCCCTTGCAGATATGATGGACACTGGACATGGACATGGCATGATCATGCCCCCGAAATGGGTTTCAGCTGCGGCCGGAAACTGCTGCAACCTTAATGTTTGA 1044 0.4148 MGMETAYLKEHEGIVHNSVGQLSSAAAGSSWWSISAFGSHQNQSSVYGDSSNYNNNNNNQIMKPFSLELHNNNNYIDQLASSSTNKQQQFLDKQFTIFPEDCKISGESQKSQATLSLQPSNADPRNRFELGFTQPMICAKYPYMDQFYGLFSAYAPQISGRIMLPLNLTSDDGPTYVNAKQYHGIIRRRQSRAKAVLANKLIKRRKPYMHESRHLHAMRRPRGCGGRFLNTRNSATNNGNGKSGSEANKKTLGHQLHSSGSQSSEVLQSSAGTLNSLKEPNGSSPNISLEVTSMYSSRGGIDGFAINHIGTPMHSLADMMDTGHGHGMIMPPKWVSAAAGNCCNLNV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03123 347 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 346 IPR001289 GO:0003700|GO:0006355
Aip02g03123 347 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Aip02g03123 347 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Aip02g03123 347 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Aip02g03123 347 Gene3D - 171 233 - -
Aip02g03123 347 MobiDBLite consensus disorder prediction 219 269 - -
Aip02g03123 347 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Aip02g03123 347 MobiDBLite consensus disorder prediction 229 269 - -
Aip02g03123 347 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 228 IPR001289 GO:0003700|GO:0006355
Aip02g03123 347 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03123 Aip-Chr2 107859129 107871202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03123 128 345 CCAAT-HAP2 Transcription Factor Family AT3G05690 47.639 2.68e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aip02g03123 CBFB_NFYA 7.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03123 K08064 - gmx:100794755 395.201