Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03068 ATGGAAGATCCTACCTATCTTCATCAGTGGCATTTGAGCTCTATTGATGAGCCTACTTTACTTCCGATTGCTGCTGCTTTTGGAGAGACTTTACAGCAACATTCATTCTCTCATCCCAGTTTCAACCCCAAAACTTCCATGGAAACTTCACTTTCTAACATTGACAGACCTACAAAACATCTCAAGAACAATAGCTGGTGTCCAACTAAAACTCCATCCGAGGCACAATTTGCTTCTTGCTCAACTCTTCTTTCATTTGTGGATCCCAATTATATAAACCAGTTGGAAGTGGTGAAGTCTAAGGATGAGATGGTTTGTCCTAAAATGAATGACACAACTCCTAAAGACATGAACTTTCAAGGAACATTAGGAAATCAATATGTGTTCGAGGCTAGTCAGGCGACTAAGCATGTAGGGCCACGTTCTAGACTTTCTCAACCTCAAGACCACATAATAGCCGAAAGGAAGCGTCGAGAGAAGCTCAGCCAGCGGTTCATTGCTCTATCTGCCCTTGTTCCTGGACTACAGAAGACAGACAAAGCTTCTGTTCTTGGAGATGCTATCAAATACTTAAAGCAATTGCAAGAGAAGGTGAAGGCTCTTGAGGAAGAACAGAACAAGAGAAAAGCTGTGGAATCTGTAGTATTTGTGAAAAAATCTCAATTATCCAATGATGCAGAAGACGCTTCTTTAGAATATGAGGGTATCTTCCATGAGGCATTACCTGAAATTGAAGCAAGATTCTGTGATAAAAATGTTCTCATAAGAATCCACTGCGAGAAGAACAGAGGAGTTGTAGAAAAATCAATCAATCAAATTGAGAAACTCCATCTAAAAGTTACCAATAGCAGTGCCATGACGTTTGGGAGCTGGGCCTTAGATATAACTATTATTGCTCAGATGGAAAAGGGATTTTGCATGACAGTGAAGGAGCTTGTGAGAAACCTGCGCTCAGCTTTTGCATCTATCATTTGA 975 0.4062 MEDPTYLHQWHLSSIDEPTLLPIAAAFGETLQQHSFSHPSFNPKTSMETSLSNIDRPTKHLKNNSWCPTKTPSEAQFASCSTLLSFVDPNYINQLEVVKSKDEMVCPKMNDTTPKDMNFQGTLGNQYVFEASQATKHVGPRSRLSQPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASVLGDAIKYLKQLQEKVKALEEEQNKRKAVESVVFVKKSQLSNDAEDASLEYEGIFHEALPEIEARFCDKNVLIRIHCEKNRGVVEKSINQIEKLHLKVTNSSAMTFGSWALDITIIAQMEKGFCMTVKELVRNLRSAFASII 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03068 324 SMART finulus 151 200 IPR011598 GO:0046983
Aip02g03068 324 CDD bHLH_AtNAI1_like 148 220 - -
Aip02g03068 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Aip02g03068 324 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 1 323 - -
Aip02g03068 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 208 IPR036638 GO:0046983
Aip02g03068 324 Coils Coil 184 214 - -
Aip02g03068 324 PANTHER BHLH TRANSCRIPTION FACTOR 1 323 - -
Aip02g03068 324 Pfam Helix-loop-helix DNA-binding domain 148 195 IPR011598 GO:0046983
Aip02g03068 324 Gene3D - 143 218 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03068 Aip-Chr2 107301140 107302932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03068 1 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.227 1.36e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip02g03068 HLH 3.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03068 - - vun:114179595 420.624