LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip02g03037	ATGGGAAAAAAATCAGCTGCGGCCACCGGGGAGGAGGAGTATGTTCCGCCGGACAACCTGAGGTGCGGGAGGACGGACGGGCGGCAATGGCGGTGCCGGCGGAGAGTGAAGGATAATCTGAAGCTGTGCGAGGTTCACTACCTTCAAGGTCGCCATCGCCAGTACAAGGAGAAGGTCCCTGAGTTCCTCAAGCTTCAGAGGAATAAGCGTAAGAGCCACTCTCATTCTCCTTCTCCTCCTTCCTCTCCTGCCAACAATGTCGAAATTAGGGCACGCAAGGACTCCAAGATTGCTCTTCTCGCCAAAAAGAAGCGCAAGCTTTCCGATGGTACTTCAGAGGCATTGGTCGTTCAGAAGAAGAATAAGAACAAGAAAAGGAAAAACAAAAACAAGGGGTTGCGGAGTGGTGATGATAAGCATTTGGAGCTTATAAGGATGGTCTTGACGAGAGAGGTTGAGAAAAGGAAGAAGAGGAACAAGAAGAATGACGATGATGAAGAAGATGAAGAGTGCAGCGAAGGAGCAGAGTTGCGGAGAGAATTGCCGAATGGAGTGATGGCTATCTCTACAGCTTCAACCGCCAATGGTTTCAATGGCAATGTGGGTTCCCATTTTGATGTAAAACTGGCTGCTGATTCTAATTCCAAAGCGCTCGCCGTCACGCCGCGTTACTTCAGGTCCAAGAATGTTGATAGAGTCCCTGTTGGCAGGTTGCAGGTTGTGCAGTATGGACAGGGCTTGAAGAAGAAGGGAAAGGGTAAGAAGAAGAGGTGTCATTGGTGCCAGAAGAGTAATTCTCAGAATCTTATCAAGTGTTCTAGCTGTAACAAGGAGTTCTTCTGCATGGATTGCATAAAACAGCGGTATTTTGGCACTGAGAATGAAGTTAAGAAGGCATGCCCTGTTTGTAGAGGAACTTGCACTTGTAAGGACTGTCTGGCAAGTCAATATAAAGACAGTGAAAGTAAGGAACATTCGGCTGGTAAAAGCAGAGTTGGTAGAATATTGCATTTACATTACCTACTCTGTATGCTCCTTCCAGTACTGAAACAAATAAGTGAATATCAGGATACTCAGCTAGAAACTGAAGCAAGAATTAAAGGGATGGAAGCTTCTGATATTCACATCAGACAGGTTGAATTTGGCTTCAATGAGAAAAAATTCTGCAATCACTGCAAAACTCCCATTTTGGATCTCAATAGAAGCTGCCCTAGTTGCTTATATAGCCTTTGCTTAAATTGTTTTCAAGAATTAAGTCAGGGAAGCATTTCTGGAGAATCAATGTTGAAGCTACCGATTAAAACAAAAACTTGCGCTGCCCGTGAGAAAGAAAATGCGGATGAGAAGGCCATTTCTAGTTGCAATATAACTCATTGTAATGGCATTGACACTGTATCATTTCCATCTACAGAACTTGGTGGTTGTGGTAATAGCCACCGTGATTTGAGATATATTTTTCCCTCTAGTTTGATCAAAGAGATGGAACTAAAGGCAGAAGAAATCGTTTGCAGCTATGAATTCCCAGAAATACCAGACAAAAGTTCAAAATGCTCAATGTGTTCTGACACAGATCACAAAACTAAAAGACATAAGCAGTTGCAAGAAGCAGCTCTAAGAGGGGATTCAAATGATAATTGCTTGTTTAACCCCACAGTTTCGGACATCAATGGTGATAATTTTGAACACTTTCAAAAACACTGGGGAAAAGGCCATCCCGTAGTGGTGCAAGATGTTCTTCGAAAGACATCAAACCTCAGCTGGGATCCACTGATCATGTTCTGTAGTTATCTTGAGCGGAGCATTACAAGATACGAGAGTGATAAGGACTTACTTGAATCTTGTTTGGATTGGTGTGAGGTGGAAATTAACATTAGGCAGTCTTTTAGCGGGTCTCTCAAATGTCGTCCTTGCGAAAACACTTGCCATGAGATGCTGAAATTAAAGGGGTGGTTGTCTTCCCAACTTTTCAAAGAGCAATTTCCAGGTCATTTTTCTGAAGTAATTGATGCTCTACCAATTCAAGAATACATGAATCCCATGTCTGGTCTTCTGAATTTGGCAGCAAGTTTGCCACTTCAGAGTACTAAACATGACATTGGACCATACGTGCATATTTCATTTGGCTGTGCCGACAAGGAAGCTGATTCTGTGACTAAACTCTGCTATGATTCATATGATGTGGTTAATATTATGGCACATACCACGGATGTTCCCCTATCTACAGAGCAGCTTTCAAAAATTCAACGACTACTGAAAAAGCATAAAGCTTTATGTCGAAGGGATTCTTCTAAAATTACTGCTGAACAACAACAGGAAGAGAAAGTAAAAGAAACGTTACCACCACATGCTGAAGAAGTGGAACAAAAAGGTTCACAGCGAGTGGCCAAAGAAGTTGACTTTTTAAGGAGAGTCAATAGAACATCCTTTGTCTCAACTCACACTGAAAAAGCAACTACTGGAAGTATAGAGAACAGCTTTTCCCAGGATAGAGAATGTGATTTATCTGATTCTGATTCGGAACCCACAGTTCTCCATGGGTTGTCTACAGGCCGTAATCCAAGAAATCTGTTTGAAAGCTCGAAAGATAAAAATAAGTTTTCTGCTGAGCATTCTGGGGCCCAATGGGATGTATTCCGCAGACAAGACGTTCCAAAGCTCATGGAATACCTTATAAGACATTGTGATGAATTTTCTCATAACTATGACAATGACAAAGTAATGGTTCATCCAATTCTAGATCAGAGCATTTTTCTTGACAAAAATCACAAAATAAGGCTTAAAGAGGAGTTTCAGGTTGAACCATGGACATTCAAGCAACATGTTGGAGAAGCTGTTGTCATTCCCGCTGGATGTCCATACCAGATCAGAAATCCTAAGTGTTGCGTTCATGTGGTGTTGGAATTTGTGTCACCGGAAAATGTCTCCGAGTGTATCCAGCTGATTGATGAGGTCCGACTGCTGCCGGCAGACCATAAAGCCAAAGTAGAAACGTTGCAGGTGAAGAAAATGGTGCTTCATAGCATGAATACAGCAATTAAGGAAATGCATGAGCTTACAAACAAGCCAGCCAAAACATGA	3078	0.424	MGKKSAAATGEEEYVPPDNLRCGRTDGRQWRCRRRVKDNLKLCEVHYLQGRHRQYKEKVPEFLKLQRNKRKSHSHSPSPPSSPANNVEIRARKDSKIALLAKKKRKLSDGTSEALVVQKKNKNKKRKNKNKGLRSGDDKHLELIRMVLTREVEKRKKRNKKNDDDEEDEECSEGAELRRELPNGVMAISTASTANGFNGNVGSHFDVKLAADSNSKALAVTPRYFRSKNVDRVPVGRLQVVQYGQGLKKKGKGKKKRCHWCQKSNSQNLIKCSSCNKEFFCMDCIKQRYFGTENEVKKACPVCRGTCTCKDCLASQYKDSESKEHSAGKSRVGRILHLHYLLCMLLPVLKQISEYQDTQLETEARIKGMEASDIHIRQVEFGFNEKKFCNHCKTPILDLNRSCPSCLYSLCLNCFQELSQGSISGESMLKLPIKTKTCAAREKENADEKAISSCNITHCNGIDTVSFPSTELGGCGNSHRDLRYIFPSSLIKEMELKAEEIVCSYEFPEIPDKSSKCSMCSDTDHKTKRHKQLQEAALRGDSNDNCLFNPTVSDINGDNFEHFQKHWGKGHPVVVQDVLRKTSNLSWDPLIMFCSYLERSITRYESDKDLLESCLDWCEVEINIRQSFSGSLKCRPCENTCHEMLKLKGWLSSQLFKEQFPGHFSEVIDALPIQEYMNPMSGLLNLAASLPLQSTKHDIGPYVHISFGCADKEADSVTKLCYDSYDVVNIMAHTTDVPLSTEQLSKIQRLLKKHKALCRRDSSKITAEQQQEEKVKETLPPHAEEVEQKGSQRVAKEVDFLRRVNRTSFVSTHTEKATTGSIENSFSQDRECDLSDSDSEPTVLHGLSTGRNPRNLFESSKDKNKFSAEHSGAQWDVFRRQDVPKLMEYLIRHCDEFSHNYDNDKVMVHPILDQSIFLDKNHKIRLKEEFQVEPWTFKQHVGEAVVIPAGCPYQIRNPKCCVHVVLEFVSPENVSECIQLIDEVRLLPADHKAKVETLQVKKMVLHSMNTAIKEMHELTNKPAKT	1025

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip02g03037	1025	MobiDBLite	consensus disorder prediction	841	855	-	-
	Aip02g03037	1025	PANTHER	PROTEIN B160	13	1020	-	-
	Aip02g03037	1025	MobiDBLite	consensus disorder prediction	66	140	-	-
	Aip02g03037	1025	Pfam	WRC	17	58	IPR014977	-
	Aip02g03037	1025	ProSiteProfiles	JmjC domain profile.	679	985	IPR003347	-
	Aip02g03037	1025	Pfam	JmjC domain, hydroxylase	871	966	IPR003347	-
	Aip02g03037	1025	MobiDBLite	consensus disorder prediction	815	863	-	-
	Aip02g03037	1025	ProSiteProfiles	Zinc finger RING-type profile.	258	304	IPR001841	-
	Aip02g03037	1025	SMART	cupin_9	660	985	IPR003347	-
	Aip02g03037	1025	MobiDBLite	consensus disorder prediction	762	782	-	-
	Aip02g03037	1025	Gene3D	Cupin	551	994	-	-
	Aip02g03037	1025	MobiDBLite	consensus disorder prediction	153	176	-	-
	Aip02g03037	1025	MobiDBLite	consensus disorder prediction	1	26	-	-
	Aip02g03037	1025	PANTHER	JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN	13	1020	IPR045109	GO:0032454\|GO:0033169
	Aip02g03037	1025	SUPERFAMILY	Clavaminate synthase-like	559	1007	-	-
	Aip02g03037	1025	ProSiteProfiles	WRC domain profile.	16	60	IPR014977	-
	Aip02g03037	1025	MobiDBLite	consensus disorder prediction	89	110	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip02g03037	Aip-Chr2	106969978	106974785	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Aip02g03037		JmjC	1.5e-08	CL0029

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip02g03037	K15601		-	gmx:100787798	1278.85