Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02981 ATGATGAAAGTCATTGCCTTATCCATCTTTTTCGTGAGGTGTATTCTGATAGAGCAAGCAGCAGCAGCTACAAGCGACTCCTCAAATCTCAGGATGGATACTGGCATAAAGCACGCTATCGTTGTCAAGGTTATGGGTCGCACTGGGTCTAGAGGGCAAGTGACCCAGGTTAGAGTCAAGTTTCTGGATGATCAGAACCGCCACATCATGAGGAATGTGAAGGGACCAGTGAGAGAAGGTGACATTCTCACCCTACTTGAGTCTGAGAGAGAAGCAAGAAGATTGCGCTAG 291 0.4742 MMKVIALSIFFVRCILIEQAAAATSDSSNLRMDTGIKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02981 96 SUPERFAMILY Nucleic acid-binding proteins 33 96 IPR012340 -
Aip02g02981 96 CDD S1_S28E 37 96 IPR000289 GO:0003735|GO:0005840|GO:0006412
Aip02g02981 96 PANTHER 40S RIBOSOMAL PROTEIN S28 32 96 - -
Aip02g02981 96 Hamap 30S ribosomal protein S28e [rps28e]. 32 96 IPR000289 GO:0003735|GO:0005840|GO:0006412
Aip02g02981 96 ProSitePatterns Ribosomal protein S28e signature. 87 95 IPR028626 -
Aip02g02981 96 PANTHER 40S RIBOSOMAL PROTEIN S28 32 96 IPR000289 GO:0003735|GO:0005840|GO:0006412
Aip02g02981 96 Gene3D - 29 96 IPR012340 -
Aip02g02981 96 Pfam Ribosomal protein S28e 36 95 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02981 Aip-Chr2 106398178 106402115 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02981 32 96 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 3.48e-35 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02981 K02979 - egr:104443388 103.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02981 02 106398178 106402115 Aip02g02981 02 106398178 106402115 ECH