Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02974 ATGAGAGGAAGAAGCTACAGCTACAGCCCATCGCCTCCAAGACGTTACAGCCATAGAAGGCGCAGTCCTAGCCCTAGGGGTCACTATAGAGGCCGTGGTAGGGATTTGCCAACAAGCCTTCTCGTTCGGAACCTCCACAAAGATTGCAGGCCAGAAGATTTACGTGGCCCATTTGGCCAATTTGGTCCACTGAAGGACGTTTATCTGCCTCGAGATTATTATACTGGGGAGCCGCGTGGATTTGGGTTTGTTCAGTATGTGGATCCAGCTGATGCTGCTGATGCAAAGTATCACATGGATGGTCAAATTCTACTTGGTCGGGAACTAACTGTGGTATTTGCCGAGGAAAACAGAAAAAAACCCCAGGAAATGAGAGCCAGAGAACGTCGGAGGTCATATGATTACAGATCTCCACGTCGATATTCTCGCTCTCCACGCTATGCTCGTACCTATTCTCGTAGTCCTGGTTATTCACCTTCTCCAGTTCGAAGGCGAAATTCCAGGTCTATCTCACCAAGATACAAAAGGTATAGGGACCGATCTTACTCCAGGTCACCTTATGGATCGAGAAGCCGCAGTCGAAGCAGGAGCTACAGTAGGAGTTACAGCAGGAGCTACAGTCGAAGCCCTAGCTACTCCAGGTGA 645 0.4946 MRGRSYSYSPSPPRRYSHRRRSPSPRGHYRGRGRDLPTSLLVRNLHKDCRPEDLRGPFGQFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPQEMRARERRRSYDYRSPRRYSRSPRYARTYSRSPGYSPSPVRRRNSRSISPRYKRYRDRSYSRSPYGSRSRSRSRSYSRSYSRSYSRSPSYSR 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02974 214 MobiDBLite consensus disorder prediction 147 167 - -
Aip02g02974 214 MobiDBLite consensus disorder prediction 1 36 - -
Aip02g02974 214 MobiDBLite consensus disorder prediction 118 214 - -
Aip02g02974 214 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 210 - -
Aip02g02974 214 SMART rrm1_1 39 112 IPR000504 GO:0003723
Aip02g02974 214 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Aip02g02974 214 Gene3D - 34 158 IPR012677 -
Aip02g02974 214 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Aip02g02974 214 MobiDBLite consensus disorder prediction 118 141 - -
Aip02g02974 214 SUPERFAMILY RNA-binding domain, RBD 38 143 IPR035979 GO:0003676
Aip02g02974 214 MobiDBLite consensus disorder prediction 186 214 - -
Aip02g02974 214 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02974 Aip-Chr2 106357319 106360134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02974 38 143 Eukaryotic Initiation Factors Gene Family AT1G71770 31.132 1.72e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02974 K12900 - cit:102626112 214.927