Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02965 ATGCCACAAATAATCTCCAAAGTAGTCAACCACACAGTCCATGAAGTCAAATCTTCATCCAACAACTGCACCACCATAATCAAGAATCTCCAAAACACTCTCAACACCATTGAGAAAAGAGCCTTAGATGATTGTCTCAAACTCTTTGATGACACCATAGTAGAACTCAACACCACCATTCTTGATCTCTCAAAAAATCCATCATCATCATCATCATCTTCCAACCAAGATTTGCAAACTCTACTAAGTGGGGCAATGACAAATTTGTACACTTGTCTTGATGGTTTCTCACAAAGCAATAATGGGAATGCTGTGAGAGGGTTGATAGAGGAGAAAGTGATTGAGATATCACATCATGTTAGTAACTCATTGGCAATGTTGAAGAAAGTGAAGACAAGTTTGAAGAAAGAAGAGGTGTTTGCTGAATATGGAACAATGAAGAAAGGGTTCCCTTCATGGGTTTCTGCTAAGGATAGGAAGCTTCTAGAAGGTGGAAATGTGAATGAAACTAAGATTGATGTTGTTGTGGCTAAAGATGGTTCTGGAAATTTTACTACTATTGGTGAAGCTGTAGTTATGGCTCCTAATTCCAGCACAACCAGGTTTGTGATATACATAAAAAGTGGAGCATACTTCGAGAATGTGGAAGTAATTAGAAAGAAGACTAATTTGGTGTTTATTGGAGATGGCATCGGAAGGACCATTGTCAAGGCAAGTAGGAATGTTGTCGATGGCTGGACCACTTTTCAATCAGCTACTGTTGCTGTGGTAGGAGAAGGCTTCATAGCTAAGGGCATAACCTTTGAGAACTCAGCCGGGCCAGACAAGCACCAAGCCGTGGCTCTACGAAGCGGCGCCGACTTCTCCGCCTTCTACAAATGCAGCTTCGTCGGCTACCAAGACACCCTCTACGTCCACTCCATGCGCCAATTCTACCGCGACTGCGACATTTACGGCACCGTTGACTTCATATTCGGTAACGCCGCCGTACTCTTCCAAAATTGCAACCTCTACGCTCGCAAACCTAACGAGAATCAGAAGAATCTGTTCACCGCACAAGGCAGAGAAGATCCGAACCAGAACACCGGAATTTCGATCTTGAATTGCAAGATCGCCGCCGCATCTGACCTAATTCCGGTCAAATCGTCGTTCAGGAGTTACTTAGGGAGGCCATGGAAACTATACTCGAGAACGGTGTACCTTAGgtag 1209 0.4359 MPQIISKVVNHTVHEVKSSSNNCTTIIKNLQNTLNTIEKRALDDCLKLFDDTIVELNTTILDLSKNPSSSSSSSNQDLQTLLSGAMTNLYTCLDGFSQSNNGNAVRGLIEEKVIEISHHVSNSLAMLKKVKTSLKKEEVFAEYGTMKKGFPSWVSAKDRKLLEGGNVNETKIDVVVAKDGSGNFTTIGEAVVMAPNSSTTRFVIYIKSGAYFENVEVIRKKTNLVFIGDGIGRTIVKASRNVVDGWTTFQSATVAVVGEGFIAKGITFENSAGPDKHQAVALRSGADFSAFYKCSFVGYQDTLYVHSMRQFYRDCDIYGTVDFIFGNAAVLFQNCNLYARKPNENQKNLFTAQGREDPNQNTGISILNCKIAAASDLIPVKSSFRSYLGRPWKLYSRTVYLR 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02965 402 ProSitePatterns Pectinesterase signature 2. 317 326 IPR033131 -
Aip02g02965 402 Pfam Pectinesterase 173 401 IPR000070 GO:0030599|GO:0042545
Aip02g02965 402 Pfam Plant invertase/pectin methylesterase inhibitor 8 126 IPR006501 GO:0004857
Aip02g02965 402 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 129 IPR006501 GO:0004857
Aip02g02965 402 SUPERFAMILY Pectin lyase-like 171 401 IPR011050 -
Aip02g02965 402 PANTHER PECTINESTERASE 2 401 - -
Aip02g02965 402 PANTHER PECTINESTERASE 2 401 - -
Aip02g02965 402 CDD PMEI-like_3 3 129 - -
Aip02g02965 402 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 132 IPR035513 -
Aip02g02965 402 Gene3D - 167 402 IPR012334 -
Aip02g02965 402 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 7 129 IPR035513 -
Aip02g02965 402 SMART PMEI_2 4 126 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02965 Aip-Chr2 106255223 106265911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02965 3 402 Carbohydrate Esterase AT4G02320 53.511 9.39e-155 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02965 K01051 - gmx:100802881 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02965 02 106255223 106265911 Aip02g02965 02 106255223 106265911 ECH