Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02962 ATGTCTAAGCTTCTCAATCTCATCATTCTCTTTCTACTCCCTTTGTTCTTTGCTTCCATAGCTTCTTCAGACACACCTCCTTCAACTCCAATCACCCCAACAAATCTATGCAAATCCACACCCGATCCAAACTACTGCAAATCCGTTCTCCCTCCAACAAAAAACGCCAATGTCTATTACTATGGCCGCTTCTCAGTTAAAAGCTCCATTTCACAAGCCACAAAGTTCTTGAGCCTTGTCAACAAGTATCTTCAACGGAGCAACACGCTTTCTGTCCCCGCGATTCGAGCACTTCAAGATTGCAAGACACTTGGAGAACTGAACCTGGATTTCTTGACGAGCTCGTTTCAAACGGTGAACAAGACGACGAGGGTGTTGGGGAGTTACCAGGCTGATGATATCCAGAACCTTCTTAGTGCCATTCTTACGAACCAACAAACATGCTTGGATGGGCTTCAAGAAGCTTCTTCAGCTTGGAGTATCAAGAATGGACTCAGTGTTCCACTTTCTAATGACACTAAGCTTTATAGTGTCTCTCTTGCTCTCTTCACTAAAGGGTGGGTTCCAAAGACAAAGAACAAAGTTGGAACATCTTCAGTTCAAGTGACTAGGAAGCAACTTGGATTCAAAAATGGTCGCATGCCTCCAATGCAGATGTCGAGCCAAACCCGAGCAATCTACGAGTCGGTGAGCCGCCGGAACCTTCTAGAACCAGTGGTGGGGACGCAGGTGAAGGTGAACGGCATTGTAACCGTTAGCCAAGACGGCACAGGAAACTTCACCACCATCAATGATGCCTTAGCGGTTGCACCCAACAAGTCCTCGTCCACGGACGGGTACTTCTTGATCTATGTTACTGCTGGAATTTACGACGAAATCGTGTCCATTGATAAAAAGAAGACTTATTTGATGATGATTGGAGATGGAATCAACAAAACAATCATTACAGGAAATCAAAGTGTCGTTGATGGCTGGACAACCTTTAATTCCGCCACTTTTGCCGTGGTAGGCCAAGGATTTGTGGGAGTGAACTTCACCGTCCGGAACACTGCCGGCGCTGTGAAACACCAAGCCGTAGCACTCCGAAACGGGGCCGATCTATCCACATTCTATAGTTGCAGCTTTGAGGGGTACCAAGACACACTCTATGCACATTCTTTAAGACAATTCTATAGAGAATGTGACATATATGGTACCGTTGACTTTATCTTTGGTAATGCTGCATCCGTGTTCCAAAATTGTAACATATACCCTAGACTCCCAATGAGTGGACAATTCAATGCAATTACCGCCCAAGGCCGAACCGATCCAAACCAAAACACTGGAATTTCAATTCATAATTGCACAATCAAGCCGAGTGATGACCTGGCCGCGAACAGTGGCGCGGCCGCGACCTACCTTGGTAGGCCGTGGAAACAATACTCTAGGACGGTTTACATGCAAACTTTCATGGATAGTGTGGTTGATTCTAAAGGGTGGAAAGAATGGGATGGTGATTTTGCATTGAGTACATTGTATTATGCTGAGTATGATAACAATGGACCCGGTTCAAACACTGCCAATAGAGTCACTTGGGCTGGTTACCATGTCATTAATTCTACGGATGCATCAAATTTCACTGTCTCTAATTTCTTGCTTGGAGATGATTGGTTGCCCCAGACTGGTGTCACTTACACTAGTAGCTTGATatag 1692 0.4521 MSKLLNLIILFLLPLFFASIASSDTPPSTPITPTNLCKSTPDPNYCKSVLPPTKNANVYYYGRFSVKSSISQATKFLSLVNKYLQRSNTLSVPAIRALQDCKTLGELNLDFLTSSFQTVNKTTRVLGSYQADDIQNLLSAILTNQQTCLDGLQEASSAWSIKNGLSVPLSNDTKLYSVSLALFTKGWVPKTKNKVGTSSVQVTRKQLGFKNGRMPPMQMSSQTRAIYESVSRRNLLEPVVGTQVKVNGIVTVSQDGTGNFTTINDALAVAPNKSSSTDGYFLIYVTAGIYDEIVSIDKKKTYLMMIGDGINKTIITGNQSVVDGWTTFNSATFAVVGQGFVGVNFTVRNTAGAVKHQAVALRNGADLSTFYSCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAASVFQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGISIHNCTIKPSDDLAANSGAAATYLGRPWKQYSRTVYMQTFMDSVVDSKGWKEWDGDFALSTLYYAEYDNNGPGSNTANRVTWAGYHVINSTDASNFTVSNFLLGDDWLPQTGVTYTSSLI 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02962 563 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Aip02g02962 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 185 IPR035513 -
Aip02g02962 563 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 184 IPR006501 GO:0004857
Aip02g02962 563 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 23 561 - -
Aip02g02962 563 PANTHER PECTINESTERASE 23 561 - -
Aip02g02962 563 SUPERFAMILY Pectin lyase-like 247 559 IPR011050 -
Aip02g02962 563 Pfam Pectinesterase 250 548 IPR000070 GO:0030599|GO:0042545
Aip02g02962 563 Gene3D - 244 562 IPR012334 -
Aip02g02962 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 185 IPR035513 -
Aip02g02962 563 SMART PMEI_2 28 182 IPR006501 GO:0004857
Aip02g02962 563 CDD PMEI-like_3 36 187 - -
Aip02g02962 563 Pfam Plant invertase/pectin methylesterase inhibitor 35 182 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02962 Aip-Chr2 106194021 106196920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02962 10 563 Carbohydrate Esterase AT4G02330 62.172 0.0 716