Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02960 ATGTCGGAGTTCGTCGCCGGCGACGAGGGCCGGGTCCTTCCGATTTGCCGCCACGCTTTTCATTCGCAATGCATAGATGCGTGGTTGGGTTCTCACTCGAGTTGCCCGCTTTGTAGAAAACCGGTTCATCCGGTTCAAGACGGTTCGGTCGTTATTGAACCGGGTCTGGAGAAGTGGTTTCCTGAACCGATTTGGTGCCCGAAGAAGAAACCGTTGGAGATGGAATTGGAATTGGAGAAAGTGCAGAAGATGAAGAATAGTAGTTACTGTATAAATATCATGGCTCTTTAA 291 0.4948 MSEFVAGDEGRVLPICRHAFHSQCIDAWLGSHSSCPLCRKPVHPVQDGSVVIEPGLEKWFPEPIWCPKKKPLEMELELEKVQKMKNSSYCINIMAL 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02960 96 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 46 - -
Aip02g02960 96 SUPERFAMILY RING/U-box 1 45 - -
Aip02g02960 96 PANTHER RING-H2 FINGER PROTEIN ATL64 1 46 - -
Aip02g02960 96 Pfam Ring finger domain 3 39 IPR001841 -
Aip02g02960 96 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 43 IPR013083 -
Aip02g02960 96 ProSiteProfiles Zinc finger RING-type profile. 16 39 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02960 Aip-Chr2 106183443 106183866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02960 1 47 C3H Transcription Factor Family AT1G53820 57.447 9.84e-16 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02960 - - ahf:112728565 203.371