Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02922 ATGAAGTTCTGCAAAACATACCAAAAGTACATGCAAGGGCAAGAGGAGAAGCTACCTGGACTTGAATTCAAAAATCACAAAAAGATTATGAAGAAATGTAGAAGTGGAGGTTGTTATTCTCCTATCATGATGAACCATAATAATAATAATAATAATAATGCCACCAAAAGTTGCCCTATTCAATGCCCAGTTTGTGATGGAACTTTCTTCCCTTCTCTGCTGAATGAAGTATCAGAAGTAGTAGGGTGCTTCAACAAGCGTGCACAACATTTGCTAGAGTTACACCTCTCTTCAAATTCTGGCTTCAAGAAGTACCTTCTTTGCTTGACAAGATCCAATCATAACACTATCATTCAACAAGGCAAAGATCTTGTCACTTATGCACTCATCAATGCTGTCGCTATCCGAAAAATATTAAAGAAATATGATAAGATACATGATTCAAAGCAAGGGCAATTATTCAAGTCACAAGTGCAGGCTATGCACAAGGAAATTCTTCAGAGTCCATGGCTTATTGAGGTTATGGCCTTATACATCAACACTAACACTAAAGACCCTACATCTTCTTTGTTTGATGGATGCTGCCTTACTTTTAAGGATGGAAAACCATCACTCACTTGTGAAATCTTTAAACCCTACAAAGTTGATATTGACTTGACTTGTTCTATATGCTTAGATACAGTGTTTGATCCTGTGGCGTTGACTTGTGGCCATGTTTTCTGTTACACATGTGCTTGCTCAGCTGCATCAGTAACCATTGTTGATGGACTTAAGGCAGCAGATCCTAAACAAAAGTGTCCTCTATGCCGCGAGAAAGGAGTTCATGAAGGTGCTGTGCACTTGGAAGAACTAAATATTTTGTTAGGCCAAAGGTGCAAGGAATATTGGGAGGAAAGACTTAGAATGGAGAGGGTAGAAAGGGTTAGGCAGGCCAAGGAGCACTGGGAATCTGTCTGTAGGACAGCCATGGGAATCTAA 978 0.3957 MKFCKTYQKYMQGQEEKLPGLEFKNHKKIMKKCRSGGCYSPIMMNHNNNNNNNATKSCPIQCPVCDGTFFPSLLNEVSEVVGCFNKRAQHLLELHLSSNSGFKKYLLCLTRSNHNTIIQQGKDLVTYALINAVAIRKILKKYDKIHDSKQGQLFKSQVQAMHKEILQSPWLIEVMALYINTNTKDPTSSLFDGCCLTFKDGKPSLTCEIFKPYKVDIDLTCSICLDTVFDPVALTCGHVFCYTCACSAASVTIVDGLKAADPKQKCPLCREKGVHEGAVHLEELNILLGQRCKEYWEERLRMERVERVRQAKEHWESVCRTAMGI 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02922 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 325 IPR033326 -
Aip02g02922 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 325 - -
Aip02g02922 325 Pfam Zinc finger, C3HC4 type (RING finger) 218 272 - -
Aip02g02922 325 ProSitePatterns Zinc finger RING-type signature. 236 245 IPR017907 -
Aip02g02922 325 ProSiteProfiles Zinc finger RING-type profile. 221 270 IPR001841 -
Aip02g02922 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 323 IPR013083 -
Aip02g02922 325 ProSiteProfiles SPX domain profile. 1 156 IPR004331 -
Aip02g02922 325 SUPERFAMILY RING/U-box 214 272 - -
Aip02g02922 325 SMART ring_2 221 269 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02922 Aip-Chr2 105654570 105657662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02922 218 270 C3H Transcription Factor Family AT4G28270 41.379 1.05e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02922 K16275 - gmx:100787904 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02922 02 105654570 105657662 Aip02g02922 02 105654570 105657662 ECH