Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02909 ATGAGTGATAACATAGTCTCATCAACACAAACCTTTAATATTAAGTACAACAATACTATCACATTTTCTTCAACAAGTGGAATCTCTTCTTCTTCTTCTCATCATCATAATCATCAAGATGATGGTGGGGTTATCAAAGAGCAAGATCGGTTGCTTCCAATTGCAAATGTTGGGAGAATCATGAAGCAAATCCTTCCAACAAATGCAAAGATCTCAAAGGAAGCAAAGGAGACTATGCAAGAGTGTGTTTCTGAGTTCATAAGCTTTGTGACCGGTGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACCGTTAATGGTGATGATATTTGTTGGGCCTTGGCTACTCTAGGGTTTGATGATTATGCTGAGCCACTCAAAAGGTACTTGCATAAGTTTAGGGAATTGGAATGTGAAAAAGCTAATAATCAAAATAATATTAAGGGTTCAGCATCTCTTCCTCATTCTCATCGACGAAGAGGAGAGACACGTTGTTGTTTCTCTGCCTCGAAGATACCACTGCGTCCAACCGTAGCCACCCTTTCACGACGTGTGTCAATTGTTGTTTCTTTCGACCATCCCAATCTCGGAACCCGCCACTTCACCTACTTCTTCGTCGTTCGAGCCTCCTCTTCGCGATCCCAGGGGAAGACCGCCGCAAGGAGAGGAGATGGCATTGCCAAGATCGAAAAAACGCACCGAAACCTTTCGCCACATCTTCAAGGATCTTCGGTACCAGTCGCTGCTGCCACTCCGTCAACTCAGGGAGTCGCGAGCATTTGCTCTCCCTTCATAGAGGTGTCGTCCTCGGTGCCGTTACCGAGGATCAGCTCTGCTGGTGTTTCTTCATCGCCGCCGCCGCCTCTGTTCAACGCATTGAAGCGTTATTGGAATGATGCGAGTGGTGCCATCCACTGTTCGTACATCAATCTCGACACCGTCAATCCCAATCACGCTAGAATCCTCGCATTCAAGGTTACGTTGAACAAATTTTGGCGGAAGTTCCTTTAA 1014 0.4586 MSDNIVSSTQTFNIKYNNTITFSSTSGISSSSSHHHNHQDDGGVIKEQDRLLPIANVGRIMKQILPTNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHKFRELECEKANNQNNIKGSASLPHSHRRRGETRCCFSASKIPLRPTVATLSRRVSIVVSFDHPNLGTRHFTYFFVVRASSSRSQGKTAARRGDGIAKIEKTHRNLSPHLQGSSVPVAAATPSTQGVASICSPFIEVSSSVPLPRISSAGVSSSPPPPLFNALKRYWNDASGAIHCSYINLDTVNPNHARILAFKVTLNKFWRKFL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02909 337 Gene3D Histone, subunit A 43 165 IPR009072 GO:0046982
Aip02g02909 337 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Aip02g02909 337 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Aip02g02909 337 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Aip02g02909 337 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 29 159 - -
Aip02g02909 337 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aip02g02909 337 SUPERFAMILY Histone-fold 48 151 IPR009072 GO:0046982
Aip02g02909 337 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 29 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aip02g02909 337 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Aip02g02909 337 Coils Coil 127 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02909 Aip-Chr2 105451795 105456864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02909 29 143 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.810 2.79e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aip02g02909 CBFD_NFYB_HMF 6.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02909 K08065 - zju:107426318 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02909 02 105451795 105456864 Aip02g02909 02 105451795 105456864 ECH