Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02903 ATGTCAAACATTTCAGGTGAAGATAATAATAATAATAATGGTAGTTTCTCCTCAGAAGAACAACTACAGGAGAATGAAGAACAGCAACAGTTGCAATTACAAAATCACCCTCATCATCATCATCATGGTTCAAGTTCTTCTAGTGCTTGCAAAAACAACAACTCCACAAGTCAAGAACAAAAGCAACAAGTTGGAATCAAGAAGAAAAGAAACCAACCTGGAAATCCAGATCCAAATGCAGAAGTGATTGCATTATCACCAACCACATTAATGGCAACAAATAGATTCATATGTGAGATATGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTACATAGGAGAGGTCACAATCTACCATGGAAGCTAAGGCAAAGAGCAACAACAGAAGAGGCTATGAAGAAGAGGGTGTACGTGTGCCCCGAAAAATCGTGTGTGCACCATAACCCTGCCCGAGCACTGGGGGATCTCACTGGGATAAAGAAACATTACAGCAGGAAACATGGTGAGAAGAAGTGGAAATGTGACAAATGTTCAAAGAAATATGCTGTTCAATCTGATTGGAAGGCTCATCAGAAAACATGTGGCACTAGAGAATATAAATGTGATTGTGGAACTATATTCTCCAGAAGGGACAGCTTCATAACACACAGGGCCTTTTGTGATGCATTAACTGAGGAAAACAACAGAATAAATCAACAAGGATTAACAAATGGGGTGCCACAAAACTTGCAAAATGAACAAGTCTCTGATCTTATAGCCACAATGCCCCTAAGCAACAGTAATGCATCAGAACTCAACAGCAGTAACCATAACAATCCACTTAGAACACTCTCACAAGAGATTGTACCTGTGCCATTCAAGTCCATGAGCATTGGTGGGGGCATTTTCTCCCCAACAAGTTCATCATCAGGTACACTATTTGGTGGTCCAAAGAGCATGCACGCTCTCCCTACCTCTTCTTCAAGCCTTCAACTCAGTTCCAACAACTCCACTGGTTTCAATTACTTCCAAGATAGCAGCAAGAACTTGGGTCTTGTTTCCAGCTCAGCTCACATGTCTGCAACTGCATTATTGCAGAAAGCAGCACAAATGGGTGCTGCTGCAAGCAGCAACAGCATTAACTCCCCCATGATGCAAAAACCCTTTGTTACTACCATGGCCGGTCCTGACCAAGTTTCTGGTGCTGCTACTGCTATGCAGCACCATAACCGTAATAACCCTCCTTCCTATGATCATCACTTCAATCCACAGGCTGATCAATTTTTTCATAAAAGGCAGCAAGAAATGCCACTGATATTTGAAGCTAATAACAATAGTAATGATGGGTCAACAACAAATAATGATATAGGAATGCTTAGCACAATGTTCATGGGAAGTGATCACAATACACAAGAGGTTGGTGCTACTAGTTTGGTCCATGAAAGAGACCTTGCAGAAGGAAATAACCAAATGGGGGCACCAAGGTTTGGTGTCAGTAATGACATGAAAACAGTTCATGATTTCTTGGGAGTTGGAGGGTCAACTTCAAGAGCTACAGGGAATTTGCATGAACCTCAGAGACATCATCATCATCAACAAGAACAACAGAGATTGGAATTAGAAGCATTAAGCCAACAGAGGTTACCACTTATTAATCACTTTCAGCATCACATTCCACATGGAGATTCAACTATGGAGAAATCTGTTTGGGACATATGA 1704 0.4131 MSNISGEDNNNNNGSFSSEEQLQENEEQQQLQLQNHPHHHHHGSSSSSACKNNNSTSQEQKQQVGIKKKRNQPGNPDPNAEVIALSPTTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRATTEEAMKKRVYVCPEKSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRINQQGLTNGVPQNLQNEQVSDLIATMPLSNSNASELNSSNHNNPLRTLSQEIVPVPFKSMSIGGGIFSPTSSSSGTLFGGPKSMHALPTSSSSLQLSSNNSTGFNYFQDSSKNLGLVSSSAHMSATALLQKAAQMGAAASSNSINSPMMQKPFVTTMAGPDQVSGAATAMQHHNRNNPPSYDHHFNPQADQFFHKRQQEMPLIFEANNNSNDGSTTNNDIGMLSTMFMGSDHNTQEVGATSLVHERDLAEGNNQMGAPRFGVSNDMKTVHDFLGVGGSTSRATGNLHEPQRHHHHQQEQQRLELEALSQQRLPLINHFQHHIPHGDSTMEKSVWDI 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02903 567 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 118 IPR013087 -
Aip02g02903 567 SMART c2h2final6 139 169 IPR013087 -
Aip02g02903 567 SMART c2h2final6 96 118 IPR013087 -
Aip02g02903 567 SMART c2h2final6 174 194 IPR013087 -
Aip02g02903 567 Gene3D Classic Zinc Finger 152 232 - -
Aip02g02903 567 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Aip02g02903 567 MobiDBLite consensus disorder prediction 507 529 - -
Aip02g02903 567 Pfam Zinc-finger double-stranded RNA-binding 96 118 IPR022755 -
Aip02g02903 567 MobiDBLite consensus disorder prediction 46 62 - -
Aip02g02903 567 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 530 - -
Aip02g02903 567 MobiDBLite consensus disorder prediction 1 32 - -
Aip02g02903 567 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 36 530 - -
Aip02g02903 567 Gene3D Classic Zinc Finger 73 149 - -
Aip02g02903 567 MobiDBLite consensus disorder prediction 1 81 - -
Aip02g02903 567 SUPERFAMILY beta-beta-alpha zinc fingers 95 195 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02903 Aip-Chr2 105370311 105374440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02903 67 375 IDZ Gene Family AT3G50700 56.402 2.56e-110 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip02g02903 zf-C2H2_jaz 8.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02903 - - ahf:112730641 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02903 02 105370311 105374440 Aip02g02903 02 105370311 105374440 ECH