Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip02g02854 | ATGGATAAAGCGGTTGATTCCAGTGGTGAGAATAAGCAGGATCAAGGGTGTAAGAACAAGCGAAAATCGGTTGATCCTTCCGTAGCTGTTACCAGTGCCCCCACATCTTTGATTGAGTTCCCTCGGTATGAATTATCGTCGGAGCTTCCACAAAACTTAAATGGTACTAATCCATCTGAGGTAGTATCAGATTGGTATAGAGTAGAATCAGAAATGCGTATGAACGAGCTTGTGGATTGGAATGATCCTATTGCAAACCAGCTTGAGGAATTACTGTTGTCTAATTTGCAAGCTGTTTTTCATGCTGCAATCAAGCAGATTGTTGAATTAGGATATGGTGAAGAGGTGGCTCACATGTCCATTTCAAGGAGAGCCTTGTACATAGAGGAAGGAGACCCTGTCTCAAATATTGTACAAGATACAGTGAATATTCTTAAGGGAAAAGATATTGCTGGTTCGGATGTCGTGTTTGAAAATTTTCAGCATTTACTGTACTACACCATGTTGGAGATGATCAGTGTACTTCGCGAAGTTAGACCGTCCTTAACAGCTGGCGAAGCAATGTGGCTTTTGTTGATGTGCGACTTGAACATCTCACTAGCCTGTTCAGCAGAAGATCGCCCGAGTGGTGTTGTTCAGAATGGGGAAAGCTCTTCTGGTTCTTCTGTTCCCCAGTCAAAGCCAGAGGTTCAAATCTCTGAATCTGACATAATTATTGAGCCAACTGTCCCAAAGGAATTGCCCCATAGTCACCAGAACAAGTCTGAAGCACCTAAGTTCGGAAGTTTCCAGAATGCCCCGAACAGTCAAAGTCTTCTTGTTTCAGAAGGGGGAAAGCTTCATAAGGGGAATGCTTCTTTGCTGGTCACTACAGAGAAATCCACAGGAACTTCAGTGGGTCCTGCTAAGGAATCTAAATCCGGGTCTAGTTCCAAGCGCCATAACAGAAAAGAAATAGTAGCACTTAGGCAGAAGTTCCTTCATATGGAGAAAGCTTACAGGGCTTGTGGAAAAGGTGGTTTTAAATCAGGGAAACTTACAAGTGTAAGTAGTTTGGTTGTTGAAAAAAGAATCAAGCAACCATCTGAAATTCCTAATCAGCAAATGAAGTGTGGTTCCTCAAATTCAACAAGCACAAAAGGAGTTCACTCAGCTGATGCAGCATGCTGTGTTTCGACCAATAGTTCCTCTACTTCAAATGGAAGAGCTCGCGTGCAAGAATTGCAGTTTGGGATGCAAAGCTGGAACAACTGGACAAAACAAAAAGTTATGCAAGTTACTGAGAGGCTCGGAAAAGTGCAGAGTGAGCTTAAAGCTCTTAGGAAGGAGAAGCAAGAAGCCGACCTATATAAAAAAGATCAGAAACTTTTGGAGGAGAATGCAGTGAAGAGAATCTCTGAGATGGAGAATGCTATGGAGAATACTAGAAAGCAAATTGAGAATGCTACTTCTGCTGCAGTTGAGCTAGAGGCAGAGAACGCTTCGCTGAAGAAGGAATTGGATGATGCTAAGTTGTGGGTTCTAAAGTCGATGACAAGCCATCGACAAGCACTTGAGAGAGAGCAGATTGTTCTTAAACAGCTTCAATCATGGGAGAGCCAAAATGGTTTGCTTCGAGATGAGCTTGAGGGAGAGAAGCACAGTTTATCTAACCTACTACAAGTGCTACACAAGGAGAAAAATCTTCTAGCCAACATTGAGGGTAGACTGGAACAAGAGAGAGCTGTGAAAGAAAAGCTCCTTGCACAGGCAGCATCCATTAGAAAGGAAAGACAACAACTCGAAGCGCACATCAAATCTGAAGAGGATACTATTAGAAAAAGGGCAGCTAATGATATGCAGAAATATGTGGATGATATTGCAAGGCTTGAGAAAGAGTTGATTGAGTTAAAAATAAAATCCGAGTCTGAACAAATAGCAGCTCTTCGCAGGGGTGTTGATGGTAAAAATGACAAGTTCTCCAGAACCAGCAAGAATACTCCTACGGTGAAGGAGAACAAGAAATCTAATGCGTCCCAAACGATGGTTAGCAATCGAGATAAAATGTCTACCGGAAGCTTGAGGCGAGAGCAGGAGTGTGTCATGTGCCTATCAGACGAGATGTCAGTGGTTTTTCTGCCTTGCGCGCACCAGGTTGTTTGTCAAGACTGCAACGAACTCCACGAGAAGCAAGGGATGAAGGATTGCCCTTCATGTAGGACCCCAATCCAACGGAGGATTCATGCAAGATTTGCCGGACATTCGAGGGTGTAG | 2253 | 0.4332 | MDKAVDSSGENKQDQGCKNKRKSVDPSVAVTSAPTSLIEFPRYELSSELPQNLNGTNPSEVVSDWYRVESEMRMNELVDWNDPIANQLEELLLSNLQAVFHAAIKQIVELGYGEEVAHMSISRRALYIEEGDPVSNIVQDTVNILKGKDIAGSDVVFENFQHLLYYTMLEMISVLREVRPSLTAGEAMWLLLMCDLNISLACSAEDRPSGVVQNGESSSGSSVPQSKPEVQISESDIIIEPTVPKELPHSHQNKSEAPKFGSFQNAPNSQSLLVSEGGKLHKGNASLLVTTEKSTGTSVGPAKESKSGSSSKRHNRKEIVALRQKFLHMEKAYRACGKGGFKSGKLTSVSSLVVEKRIKQPSEIPNQQMKCGSSNSTSTKGVHSADAACCVSTNSSSTSNGRARVQELQFGMQSWNNWTKQKVMQVTERLGKVQSELKALRKEKQEADLYKKDQKLLEENAVKRISEMENAMENTRKQIENATSAAVELEAENASLKKELDDAKLWVLKSMTSHRQALEREQIVLKQLQSWESQNGLLRDELEGEKHSLSNLLQVLHKEKNLLANIEGRLEQERAVKEKLLAQAASIRKERQQLEAHIKSEEDTIRKRAANDMQKYVDDIARLEKELIELKIKSESEQIAALRRGVDGKNDKFSRTSKNTPTVKENKKSNASQTMVSNRDKMSTGSLRREQECVMCLSDEMSVVFLPCAHQVVCQDCNELHEKQGMKDCPSCRTPIQRRIHARFAGHSRV | 750 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip02g02854 | 750 | MobiDBLite | consensus disorder prediction | 289 | 317 | - | - | |
| Aip02g02854 | 750 | Pfam | Family of unknown function (DUF6592) | 95 | 204 | IPR046527 | - | |
| Aip02g02854 | 750 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RF298-RELATED | 403 | 745 | - | - | |
| Aip02g02854 | 750 | Coils | Coil | 606 | 640 | - | - | |
| Aip02g02854 | 750 | Pfam | Zinc finger, C3HC4 type (RING finger) | 690 | 738 | - | - | |
| Aip02g02854 | 750 | MobiDBLite | consensus disorder prediction | 649 | 683 | - | - | |
| Aip02g02854 | 750 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 665 | 743 | IPR013083 | - | |
| Aip02g02854 | 750 | PANTHER | OS05G0141500 PROTEIN | 4 | 400 | IPR046934 | - | |
| Aip02g02854 | 750 | PANTHER | OS05G0141500 PROTEIN | 403 | 745 | IPR046934 | - | |
| Aip02g02854 | 750 | MobiDBLite | consensus disorder prediction | 655 | 682 | - | - | |
| Aip02g02854 | 750 | MobiDBLite | consensus disorder prediction | 289 | 306 | - | - | |
| Aip02g02854 | 750 | Coils | Coil | 423 | 506 | - | - | |
| Aip02g02854 | 750 | MobiDBLite | consensus disorder prediction | 209 | 268 | - | - | |
| Aip02g02854 | 750 | Coils | Coil | 539 | 604 | - | - | |
| Aip02g02854 | 750 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Aip02g02854 | 750 | ProSiteProfiles | Zinc finger RING-type profile. | 693 | 733 | IPR001841 | - | |
| Aip02g02854 | 750 | MobiDBLite | consensus disorder prediction | 210 | 232 | - | - | |
| Aip02g02854 | 750 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Aip02g02854 | 750 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RF298-RELATED | 4 | 400 | - | - | |
| Aip02g02854 | 750 | SUPERFAMILY | RING/U-box | 687 | 739 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip02g02854 | Aip-Chr2 | 104627647 | 104631131 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip02g02854 | 693 | 740 | C3H Transcription Factor Family | AT1G73950 | 41.667 | 9.05e-06 | 47.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip02g02854 | - | - | lang:109335169 | 611.683 |