Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02819 ATGGCAGGGGATGAAGCTATTAAATATGCTTCTACAACCGCCACCACCACTACTCCTATGTCCAAATCAAACAAATCAACCATGAAAAGGTTCATTGGTGTGAGGCAGAGGCCTTCAGGAAGATGGGTGGCTGAGATCAAAGACTCATCACAACATGTGAGATTATGGCTTGGGACCTATGACACACCGGAGGAGGCTGCAAGGGCCTATGACGAAGCGGCACGTGTCCTACGAGGCGAAAATGCAAGAACAAACTTTGCATTATTTGGTTCTGATACCGATAGAAATTCCAGTAAATTATTATCTGAGTCTGACGGAAAAAGCAGACTGAGTTTTCCTTCGTTAAAGGCGAAACTCAGTAAAAATCTTCAGAACATTCTAGCAAGAACAAGCGATAGTAACAATAACAGCACGAAATCTTCGTCGGCAAAGAGTAGGGTGAGTGATCATTTCACTTTTGCTAGCATATTCAAAAGAAGAAATTGTTACCAACAATACCCTCATCAAATGCCTAGTCCAATTGATATGAAGAACATTGATAAAGTTGTGCAACCTAGTATCATTGTTCCCCCTTTGGAAAATGATCATAATCACAACAATAATCATAATGGTTCTTCAACATCATGGGAAAATTCTAGTGTTTCTGATTGTAGTAGTTGTGATTGGTTTGGATCAGATTTTGGAGATTTCAGTGTTGGTGATCAAGGGTATTTGGATCAATTGTTGGGGTGGGTTGAAAGTTCAAATCTTTGTCCAAATGGGGTTGGTGATTTTGATGATGAGAGTTCAAGAAGTAAGAGGTTTAAGGTGTCTTCTACAGTTCTTGTTCCTCCTACTTTCACTTCTTCATCATATGATTATTGTGGTTCACCTTATGATTATTATAATTATAATACTAATAATGGATGTGGCTCTCCATGTAGTGGTTATGCCTCTCCATATAATGTTTCCCCCAAATCCTCACTCCTAGGGTTCCTGCTCCAAACCTTCGACTCCTCCGATAAGCATTTGCAGGTTCTGTGA 1023 0.3998 MAGDEAIKYASTTATTTTPMSKSNKSTMKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARVLRGENARTNFALFGSDTDRNSSKLLSESDGKSRLSFPSLKAKLSKNLQNILARTSDSNNNSTKSSSAKSRVSDHFTFASIFKRRNCYQQYPHQMPSPIDMKNIDKVVQPSIIVPPLENDHNHNNNHNGSSTSWENSSVSDCSSCDWFGSDFGDFSVGDQGYLDQLLGWVESSNLCPNGVGDFDDESSRSKRFKVSSTVLVPPTFTSSSYDYCGSPYDYYNYNTNNGCGSPCSGYASPYNVSPKSSLLGFLLQTFDSSDKHLQVL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02819 340 MobiDBLite consensus disorder prediction 1 25 - -
Aip02g02819 340 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Aip02g02819 340 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Aip02g02819 340 MobiDBLite consensus disorder prediction 9 25 - -
Aip02g02819 340 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Aip02g02819 340 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Aip02g02819 340 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 256 - -
Aip02g02819 340 SUPERFAMILY DNA-binding domain 30 87 IPR016177 GO:0003677
Aip02g02819 340 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
Aip02g02819 340 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Aip02g02819 340 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Aip02g02819 340 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02819 Aip-Chr2 104184718 104187490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02819 7 87 AP2-EREBP Transcription Factor Family AT5G19790 60.494 1.02e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip02g02819 AP2 4.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02819 K09286 - gmx:100799444 343.199