Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02818 ATGAGACCCGTGTTTTGCGGAAACCTGGACTTCGACGCGCGTCAATCTGATGTTGAGAGGCTCTTCAAAAGATACGGGAAGGTTGAAAGAGTGGACATGAAATCTGGGTTTGCTTTTATCTACATGGAAGATGAAAGGGATGCTGAGTATGCAATCAGAAGACTTGATAGAACTGAATTTGGAAGAAAGGGGCGCCGTATACGTGTTGAGTGGACAAAGCAAGAACGGGACAGCAGAAGGTCAGGTGATTCAAGAAAATCCTCAAGTAATTCAAGACCGTCGAAGACTTTGTTTATCATAAATTTTGATCCAGTTCACACTAGGACAAGGGATCTGGAGAGACACTTTGATCCCTATGGGAAAATATCAAATATAAGGATCAGGAGGAATTTTGCTTTTATACAATATGAAACTCAGGAGGATGCTACAAGAGCTTTGGAAGCAACAAACTTGAGCAAATTTATGGATCGTGTTATCACAGTGGAGTATGCTATTAAAGATGATGACGACAGGAGGAATGGATACAGTCCTGATAGAAGAGGCAATGACTCCCCTGATGGGAGATATGGCCGGGGCAGATCCCCGAGTCCATATCGCAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCGAATCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCAAAGTATGAACGAGGTGAAAGCCCAGTCAATGGCAGATATGACAGCCGGTCTCCTCCTCCACGAGAAAGGTCTCCTCCTCCACGTGAAAGGTCGTCTCCTCCACGTGAAAGAAGAAGCTTGCTTTCTTTGTTACTCATTCTTAAAGAAACAGTGAGGAACAAGATTGATAGCTCTAAACAGGAAAAAGAAAAGTCCTTTGAATAG 873 0.4433 MRPVFCGNLDFDARQSDVERLFKRYGKVERVDMKSGFAFIYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDSRKSSSNSRPSKTLFIINFDPVHTRTRDLERHFDPYGKISNIRIRRNFAFIQYETQEDATRALEATNLSKFMDRVITVEYAIKDDDDRRNGYSPDRRGNDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPASRPEPRGSPKYERGESPVNGRYDSRSPPPRERSPPPRERSSPPRERRSLLSLLLILKETVRNKIDSSKQEKEKSFE 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02818 290 MobiDBLite consensus disorder prediction 72 93 - -
Aip02g02818 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Aip02g02818 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Aip02g02818 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Aip02g02818 290 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 211 - -
Aip02g02818 290 MobiDBLite consensus disorder prediction 168 187 - -
Aip02g02818 290 SMART rrm1_1 96 162 IPR000504 GO:0003723
Aip02g02818 290 SMART rrm1_1 3 70 IPR000504 GO:0003723
Aip02g02818 290 MobiDBLite consensus disorder prediction 72 86 - -
Aip02g02818 290 MobiDBLite consensus disorder prediction 220 259 - -
Aip02g02818 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Aip02g02818 290 PANTHER - 4 211 - -
Aip02g02818 290 SUPERFAMILY RNA-binding domain, RBD 2 168 IPR035979 GO:0003676
Aip02g02818 290 MobiDBLite consensus disorder prediction 168 262 - -
Aip02g02818 290 Gene3D - 86 176 IPR012677 -
Aip02g02818 290 Gene3D - 1 85 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02818 Aip-Chr2 104177921 104184662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02818 4 161 Eukaryotic Initiation Factors Gene Family AT4G34110 24.277 4.94e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02818 K12893 - gmx:100797778 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02818 02 104177921 104184662 Aip02g02818 02 104177921 104184662 ECH