Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02811 ATGGCTGCGTCAGTGGGTGGAAGTAGGCTTCAAAGCATGTTGCAAGCTGCAGTTCAATCTGTTCAATGGACCTACAGCCTCTTCTGGCAACTTTGTCCACAACAGATGATTTTGGTTTGGGGGGATGGTTACTACAATGGGGCAATTAAGACAAGGAAGACAGTGCAACCAATGGAGGTTAGTGCTGAGGAGGCGTCTCTCCAAAGAAGCCAACAGCTCAGGGAACTCTATGACTCCTTGTCCGCCGGAGAGACGAATCCGCCCACTCGCCGCCCTTGCGCCGCCTTGTCGCCGGAGGACCTAACAGAATCCGAATGGTTCTATTTGATGTGTGTCTCATTCTCATTTCCTCCTGTCCTGCATTTTATGGCATTCTATATTTTTACTATGCGTAATATATTATTCAAGCAAATAATACGAATTAATAGAAAAATGAGAAAAATAATACTAATTTCACAAAAACGATTTATGCCATGCAAATCACAGACCGTGGTGTGCATTCCTCTATTGGACGGTGTCGTTGAGTTTGGCACAATAGATAAGGTAAATTTATCTTATTTTTTATATATGTCTAAAGATATTAAGTTTATCCAACACGTGAAGAGTTTTTTCATAGAACACCACCACGCCTCCGTCCATCCTCCGCCGCCGCCGCCGAAGCCAGCCCTCTCAGAGCACTCCACCTCCAATCCTGCATCCTCATCTGACTGTCTCATTTATACCGTAGCGGACCCACCATTACCTCCGCCTAATCTTACCCATGAAGACAATATGGAAGAAGATCAAGACAATGAGGAAGAAGAAGAGGAAGAGGAAGACGAAGATGATGAAGAAGAAGAACCCATATTGGACTCTGAAGATGAAAAGAGACGAAATAATAATAATGTTTCAGGTGGAATTACAGAACCAAGTGAGTTGATGCAATTAGAAATGTCTGAAGATATTAGAGTTGGATCACCTAATGATGGATCAAATAATCTTGATTCCAATTTTCATTTACTAGCCGTTACCGAAGCAGATAATCATTCGGGTCAAGTTGACTCTTATCGAGTTGACCCGACCCAAAGATGGGATCCAATTCAAAGCCCTTTGGATCAACTCCAAGTTCAACTACCAGTCTTTTCACCTATAGAAGATCAAATATTGACACAAGAAGATGATCACTATTCTCAAACTGTATCAAGCATCCTCCAAAATCAATCAACCCGTTGGGCTGAGTCTCCTTCAATAGCATGCTACGTCACTTGCTCCAACCAATCAGCATTCGCCAAGTGGACATCCCTCGTCGCCGACGAACATCTCCACGCCGCCACGGCCGACGGCTCCTCCCAATGGCTCCTAAAATACATCTTATTTACCGTGCCCTACTTACACTCCAACAAAAACAATGAAGAAAACAATAGTTCTCCAAATAACACAAACCCTACCAGCTCAGCCGGTCCGACAGACCGGCTGCGCGGAGGGGGAAAAGGCAGTGGCACTCCGCAGGACGAGCTGAGTGCCAATCACGTCCTGGCGGAGCGCCGCCGCCGTGAGAAGCTAAATGAGAGATTCATCATCCTAAGATCACTTGTCCCATTTGTTACCAAAATGGACAAAGCTTCAATTTTAGGTGACACAATTGAATATGTGAAACAACTTAGAAGGAAGATCCAAGACTTAGAGGCACGTATCCGACAAATGGAAGCTGAACAACAACGTTCGAGGACACCATCAACAACAATTGAAGTTCACCATTGTGGCTCCTCCAACAAGGAGCAACAACAACACACGGTTGTGTTAGGGCATGAGAAGAGGAAGGTGAGGATTGTGGAGGGGACGAAGACCGCAACCAAGGTGGCGGCGGCGGCGGCCACAGAGGCATCGGTGCAGGTTTCGATTATAGAGAGTGATGCATTGTTGGAGTTGGAGTGTAGTCATAGGGAAGGGTTACTACTTGATGTGATGTTGGTGTTAAGAGAGATGAAGATTGAGGTTATTGGGGTTCAATCCTCACTCAACAATGGAGTTTTTGTGGCTGAATTGAGGGCCAAGGTTAAGGACAATAATTGTGGGAAGAAGGTTAGCATTGTGGAAGTCAAGAGGGCATTAAATCAGGTTATACCCCATACTGGTGATTAA 2121 0.4512 MAASVGGSRLQSMLQAAVQSVQWTYSLFWQLCPQQMILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYDSLSAGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPPVLHFMAFYIFTMRNILFKQIIRINRKMRKIILISQKRFMPCKSQTVVCIPLLDGVVEFGTIDKVNLSYFLYMSKDIKFIQHVKSFFIEHHHASVHPPPPPPKPALSEHSTSNPASSSDCLIYTVADPPLPPPNLTHEDNMEEDQDNEEEEEEEEDEDDEEEEPILDSEDEKRRNNNNVSGGITEPSELMQLEMSEDIRVGSPNDGSNNLDSNFHLLAVTEADNHSGQVDSYRVDPTQRWDPIQSPLDQLQVQLPVFSPIEDQILTQEDDHYSQTVSSILQNQSTRWAESPSIACYVTCSNQSAFAKWTSLVADEHLHAATADGSSQWLLKYILFTVPYLHSNKNNEENNSSPNNTNPTSSAGPTDRLRGGGKGSGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQDLEARIRQMEAEQQRSRTPSTTIEVHHCGSSNKEQQQHTVVLGHEKRKVRIVEGTKTATKVAAAAATEASVQVSIIESDALLELECSHREGLLLDVMLVLREMKIEVIGVQSSLNNGVFVAELRAKVKDNNCGKKVSIVEVKRALNQVIPHTGD 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02811 706 SMART finulus 504 553 IPR011598 GO:0046983
Aip02g02811 706 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 204 IPR025610 -
Aip02g02811 706 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 498 547 IPR011598 GO:0046983
Aip02g02811 706 PANTHER TRANSCRIPTION FACTOR TT8 9 703 - -
Aip02g02811 706 MobiDBLite consensus disorder prediction 462 481 - -
Aip02g02811 706 Coils Coil 537 564 - -
Aip02g02811 706 MobiDBLite consensus disorder prediction 258 283 - -
Aip02g02811 706 MobiDBLite consensus disorder prediction 462 504 - -
Aip02g02811 706 Pfam Helix-loop-helix DNA-binding domain 501 548 IPR011598 GO:0046983
Aip02g02811 706 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 500 571 IPR036638 GO:0046983
Aip02g02811 706 Gene3D - 494 565 IPR036638 GO:0046983
Aip02g02811 706 MobiDBLite consensus disorder prediction 210 306 - -
Aip02g02811 706 MobiDBLite consensus disorder prediction 565 590 - -
Aip02g02811 706 Coils Coil 251 280 - -
Aip02g02811 706 MobiDBLite consensus disorder prediction 562 590 - -
Aip02g02811 706 PANTHER TRANSCRIPTION FACTOR TT8 9 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02811 Aip-Chr2 104084939 104099481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02811 316 703 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 37.245 7.03e-57 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip02g02811 bHLH-MYC_N 4e-30 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02811 - - adu:107475781 1160.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02811 02 104084939 104099481 Aip02g02811 02 104084939 104099481 ECH