LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip02g02748	ATGGTGAGAGGGAAGACTCAGATGAGACGCATAGAAAATGCCACAAGCAGGCAAGTGACGTTTTCAAAGCGCCGCAATGGGTTGCTTAAGAAAGCGTTTGAGCTTTCTGTTCTTTGTGATGCTCAGGTTGCTCTCATCATCTTCTCTCCAAGAGGCAAGCTTTATGAATTTGCAAGCTCAAGCATGCAGGAGATAATTGAAAGATATCGCAAGCATACAAAGGATACTCCACCAGCAGCCAAATCAGCTGAACAGAATGTCCAGCAGAATTTGAAGCAAGAAGCAGCAACCTTGATGAAAAAGATTGACACTCTCGAAGCCGCAAAAAGGAAATTCTTGGGAGAAGGTTTAGGGTCATGCAGCATTGAAGAACTGATACAGATAGAACAACAATTGGAGAAGAGTGTAAGCATTGTTAGAGCAAGAAAGACTCAGCTTTACAAGGAACAAATTGAGCAACTAAAAGAAAAGGAAAAAGCCCTAATGGATGAAAATGCCATGCTCTATGACAAGTGTGATAATATGGTTCAAAATCTAGCAACAAATAAAACAAATAATAAAGATCAGAGAGAGAATCAAGCTCAACCCTATGCAGAAAGTAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGACTTCCTGAAACAAGAACAAGGCGCATGTCTCCTACAAATTAA	684	0.405	MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAQVALIIFSPRGKLYEFASSSMQEIIERYRKHTKDTPPAAKSAEQNVQQNLKQEAATLMKKIDTLEAAKRKFLGEGLGSCSIEELIQIEQQLEKSVSIVRARKTQLYKEQIEQLKEKEKALMDENAMLYDKCDNMVQNLATNKTNNKDQRENQAQPYAESSSPSSDVETELFIGLPETRTRRMSPTN	227

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip02g02748	227	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Aip02g02748	227	Pfam	K-box region	83	172	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aip02g02748	227	Coils	Coil	140	171	-	-
	Aip02g02748	227	Coils	Coil	88	108	-	-
	Aip02g02748	227	MobiDBLite	consensus disorder prediction	182	208	-	-
	Aip02g02748	227	PANTHER	MADS-BOX PROTEIN SOC1	1	217	-	-
	Aip02g02748	227	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Aip02g02748	227	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Aip02g02748	227	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Aip02g02748	227	CDD	MADS_MEF2_like	3	75	IPR033896	GO:0000977\|GO:0045944
	Aip02g02748	227	MobiDBLite	consensus disorder prediction	182	227	-	-
	Aip02g02748	227	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Aip02g02748	227	PANTHER	MADS BOX PROTEIN	1	217	-	-
	Aip02g02748	227	SUPERFAMILY	SRF-like	3	74	IPR036879	GO:0003677\|GO:0046983
	Aip02g02748	227	ProSiteProfiles	K-box domain profile.	88	178	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aip02g02748	227	Gene3D	-	14	97	IPR036879	GO:0003677\|GO:0046983
	Aip02g02748	227	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Aip02g02748	227	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip02g02748	Aip-Chr2	103386733	103395954	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip02g02748	1	159	MADS-box Gene Family	AT2G45660	75.472	4.33e-83	243

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Aip02g02748		K-box	2.3e-28	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip02g02748	-		-	mtr:MTR_8g033220	286.96

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip02g02748	02	103386733	103395954	Aip02g02748	02	103386733	103395954	ECH