Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02700 ATGAGGTATCTCGATCTGGATGATAGATCAAGGGAGGCAAGGTCACTAACGCGAACCAAGTGTCCAGCTCGGCTTAGGGTAAAGCTTGACTACGGCTGCCGTAGATGGAAGGTATCATGTTTTGTGGAATCTCACAACCACGATCTGACGCCACCCCAATTTGCGCATCTGGTACCGGCTAATCGTCGTCTCACTGTGACTGATAGAGTCCAAGTGGAAAATCTTCATAATTTTGGTGTCAAGAGCTGCCATATTATGGGGTATATTGCATTCCAGAAGGGTGGATATCGTCATGCTGGCTTCACACGGAAAGATTTGTACAACCACATCGATCGCTATCGTCGGGCAAAAGTTAAAAACGGGGATGCCAATGCGGCAATAAACTATTTGATTGGCAAGTCAAACAACGATCCGCTGTTCTTTGGAAAGTATATGTTCACTACTGACGAAAGGCTGGAGCATATTTTTTGGTCAGATGGGCAGTCAATTATCGACTATCACTGCTTTGGAGATATTGTTGCCTTTGATTCTACCTACAAGAAGAATAAATACAACAAGCCTTTGGTCATTTTCTCTGGATGCAATCATCACGGGCAGACTGTTATCTTCGGCTCCGCCCTACTATCCGACGAAACCACAGAGACGTATAAGTGGTTGTTGGAAACCTTTGTTGAAGCGATGGGTGGGAAAAGTCCAAAAGCGGTAATAACTGACGGAGACCTTGCCATGCGAGATGCAATAAGGAATGTTCTGCCTGATGCGACCCATCGGTTATGCGGCTGGCATCTGCAGAGAAATGCATGTGAAAACATAAAGAATCCTAATTTCCTGCGCGATTTTAAGGGTCTTATATACGACAACAACGACCAGAGAGACTTCGATCGGAGATGGGCAGCCATTTTGGATAAGCACAACCTTGTTGGCAGTACCTGGATGGAAAAGACGTACGAAACTCGTGAGATGTGGTCCCATTGTTTCCTTCGGAATAAGTTTTTCGGTTACATAAGGACGACATCACAGTGTGAAGGTATAAATTCTCTCATCAGATTCTATGTTAATCGCAAGAACACCCTCATTGACTTCATGCATAACCTGGATAGGGCCTTAAAGGAGTATAGAAACAACGAGTTAATAGCTGACTTTAAGTCTCAGTGCTCAGAGCCAGTGATGATTACCTCGTTGGAGGTATATGAAAGATCTGCATCATGTTATTTCACGCGAAACATTTTCAAGGAAATTCGTAATGAGATTCAGAGGGCAGGGGCTTTGAATATAACGGTACTAAGCACAACCTTGGACAAGGTAGAGTTCAGTGTGACTGCTCTCGAAGACCCGGGCAAAGATCGACGGGTGGAAGTCGATAGAGGTAAGAATCTGTTCTCGTGCTCGTGCAAGCTGTTTGAATCACGTGGTATTCCCTGTAGTCATATCTTCTGTGCCATGAAGTTCGAAAACATACTTGAGTTTCCAGATTCGTTGATATACAAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACAGAAATGCCTGTGAATGATGACGTCGAAAGGGTCTTAAAGTTTCGAGTTGGAGCATTGGCATCGAATTGCAACAAGCTGTGTGATATTGCTTGCAAGGATCTTGCAGACTTTGATGAAGTCCAGTCTGAACTTGTCAATTTAGTTATCCGCCTGCAGTCACGCAAACAGGGCAAGTCAACTCCTAATGTTAACGTGGAAGGCATCAACGATCCATTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAAGTCTTCTTGGAGGAAGAAGAGAGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCGCTGTCCAGATCTGATGCAGCATAGTGTTGAAGGTAACCATCGTGATCGATCATACGGCAATGCATCAGCCAAGGACTCAGGTTTTAGTCCAGAGAGGTTTGCTAATTCTTCGAGATCGTTCTCAATTAAGTCCGAACACCTCTCAGGACCTAATACCAAGCCTTTTAAAAAGGGTGGAACAAGGAAGTTTACGGCGACGGGTATGAGGAACCGGAAGGGTAAAGACAACACTTTTGTTGAGCAAAGCCTCCATGAAAGCAGCGAATCCATTGACATCGCGTCCACGAATGGTGTTTTCAATAAAAATCTCTACTCGTTAACACAGCAGGTGAAGGAGTCACAGCAGGACAAGAGACATTCATTCACGAACTATGAATGCATTAATGATGTTGTTGATGATAAATGTGACACACGACATGTGCAGATCGATGTCCGAGATCCGTTACCATCGTCACTGCCTTGTGGCAACAAACAAGGATCGTACATGGCATTGTTCGCATCGATGCATAGGACACGTTGA 2358 0.444 MRYLDLDDRSREARSLTRTKCPARLRVKLDYGCRRWKVSCFVESHNHDLTPPQFAHLVPANRRLTVTDRVQVENLHNFGVKSCHIMGYIAFQKGGYRHAGFTRKDLYNHIDRYRRAKVKNGDANAAINYLIGKSNNDPLFFGKYMFTTDERLEHIFWSDGQSIIDYHCFGDIVAFDSTYKKNKYNKPLVIFSGCNHHGQTVIFGSALLSDETTETYKWLLETFVEAMGGKSPKAVITDGDLAMRDAIRNVLPDATHRLCGWHLQRNACENIKNPNFLRDFKGLIYDNNDQRDFDRRWAAILDKHNLVGSTWMEKTYETREMWSHCFLRNKFFGYIRTTSQCEGINSLIRFYVNRKNTLIDFMHNLDRALKEYRNNELIADFKSQCSEPVMITSLEVYERSASCYFTRNIFKEIRNEIQRAGALNITVLSTTLDKVEFSVTALEDPGKDRRVEVDRGKNLFSCSCKLFESRGIPCSHIFCAMKFENILEFPDSLIYKRWTKNAKNEFISTEMPVNDDVERVLKFRVGALASNCNKLCDIACKDLADFDEVQSELVNLVIRLQSRKQGKSTPNVNVEGINDPFVVKSKGAPSKKSSWRKKRACSNCHKYGHYYKRCPDLMQHSVEGNHRDRSYGNASAKDSGFSPERFANSSRSFSIKSEHLSGPNTKPFKKGGTRKFTATGMRNRKGKDNTFVEQSLHESSESIDIASTNGVFNKNLYSLTQQVKESQQDKRHSFTNYECINDVVDDKCDTRHVQIDVRDPLPSSLPCGNKQGSYMALFASMHRTR 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02700 785 Pfam FAR1 DNA-binding domain 8 50 IPR004330 -
Aip02g02700 785 ProSiteProfiles Zinc finger CCHC-type profile. 601 616 IPR001878 GO:0003676|GO:0008270
Aip02g02700 785 PANTHER OS02G0262500 PROTEIN 8 599 - -
Aip02g02700 785 MobiDBLite consensus disorder prediction 652 681 - -
Aip02g02700 785 SUPERFAMILY Retrovirus zinc finger-like domains 587 619 IPR036875 GO:0003676|GO:0008270
Aip02g02700 785 SMART 26again6 460 487 IPR006564 GO:0008270
Aip02g02700 785 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 599 IPR031052 GO:0006355
Aip02g02700 785 Pfam MULE transposase domain 172 266 IPR018289 -
Aip02g02700 785 ProSiteProfiles Zinc finger SWIM-type profile. 449 485 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02700 Aip-Chr2 102561027 102563689 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip02g02700 MULE 4.6e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02700 - - ahf:112755379 1492.63