Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02599 ATGGCTCTTATTCCTGATACAACCCAAGGGCGTTCATTTTTTCTTGAGGTTTCTTCTGAGATGGACATGGGTGAGCTTCCAAGCAATTTTTACAGGAGATTTCATGATGAGCTCGCTTCATTGTTAACGTTTGCTGATTGTGCTGGCAATGAGTTGCAAGTTCTGATTGAGAAAGGCCCCCGAACGGGCATTATTGTTAATGGTTTTCGGAATTTTTCATCCTTCTATGGCCTTAAACTTGGTGGTTGGCTTAAGGTTTCTTATGTAGGTTCTAACCACTTCATAATTAATGAAGTCATTGATCATAACATGAAGGTTAAGGAGTTTTCATCTCCTCCTTTCAAGGTTTCACTAGATATTAAACCCACTGTAGGGTTTGATAGTGTCATTGATATATCTAAAGAATCTTCTCTCTTGAGCTCTGTCCATGTTAAAGATTTATCATATAAAAGTCCTCAGCCTTATTCCATCAATGAATCATTTTATACTGTTAACTCTACAAACCTCCTTCCATCTGATAATAATAATAGTGTAGTCCCATTAGACATTTGTCTTCAACTTCAAAGCACACCACAAATTCTTAACACAACTCATGTTCCATCATTTGCCAATGACAACTTTTTTGACAGAGCTCACTACAGTAATATCCCAACACAATTCCATCAAGAACCTCTTCATTTTCCTTTTATTCATAACGAGAAGCAGTCTAATTTTTCTCTTGATCTTTACAAGACTAGATGTCATTCTGTTATGAGGACGCATCCCCTTTCTCATGATGATTATTCTTTCGCTATTGGCAATGACATCTCGAACTCAGTCAGTGATTTTGTTCTTGCACATAACCCCAACCCACCGAATGAATTTCCTCTTCCTCCCCCTCCCCTTCCGTCCTCGATTGTTTCTCCGGTTGTGTATTCAATAGTTAAGGTCCTATCTCCATTTCAATCTAAACATTATGCAATGCTTCTTCCTGCCAGGTTTGCTGTCAGAGCATTTTCTAGAAAATTGGATTTTGTAAATGTTATTCAACTGACTGGTCCGTCTATAAGGATGAAGCTTCGATGGCGTGATATTAGGCCCAACGAGGATCTTGATGTATCCTCTGACCAGCAGAATTGGCGAATCAAGGTTAGAGTGATTAAGATATGGTCATTATCTGCTGTTGAAGACAAATACAGGAAACCAATGCTTGAGTTTATTGTTATGGACCAACTGGAACCCCATAGAAGGCTTTTTGAGAACCACATTATTGATGGAAGTCTCTACTCCATATCAAACTTCTCCCTTGCTATTAATGATCAAAAATATAAGCCCACTACTCATTCTCTTCGTATATATTTTAAGAGGGAGACTCAGCTACGCCGCGTGGAGGATATTAATTTCCCTACTAATATGTTTCATTTTGTGCCAAATGAACTCATTCTCTCTCAACAGAATCCACAATCCCACTTGATAGATGTTATGGGTCTTATTACTGCCAAAGGGGACATAGTTGAATTCTCTAAGAATGGCAAGAAGTCAATCTATATTGTTGTAGAGCTTGATGACATGCAGGGAAAGGGGACCATTAGATGTACTCTTTGGGAAGAGTTTGCTACTCAATTGGTTCAGCACATACAGGATAATCCAACTACTGAATACATTTTAATTATTCAGTTTGCAAAGTTTAATTTATTTAAGAGTGCTATGGGTATATCAAACACCAATTATAATTCTTTATTGTACATTAATCCTGACTTTAAGGAAGTAAAGGATTTTCGGCAGAGTTTCATTATGTGCAATGATCAGCCCAGAAATGCATTAACTCAGATTCCTTCTCACACTGCATATTCTATGGAGGATGATTTGCTGAATAGAACTCCTTACAAGCCTATTTGTGAGATTAAGGAATTAACTGATGGTGGATTTTACTGTACTATTGGTACGGTTATTTCTGTTGAAAACAAGAATGGATGGTGGTATAAGGGTTGCAAGTTGTGCTATCGTGCTTTGAAAGAGGATGAGAGTTTTTATTACTGCATGTTTTGTGATTCCTTCCCAAACATTCATGTCCCTAGATTTTGTGTCCAAGTCAGGGTATGTGATGATACTGATAATGCAGCATTTGTCATATATGACAAAGAAGCTTCTCGCTATCTTGGCACTTCTGCTTCAGATCTTCGTGCTTCTCAGCTGTCTAAGGGATCTTCTAAGGATGATATTCCAGATGAGATTAATTCATTTAAAGGGAAGAAATTTTTGTTTAAAATTTCTGTAAAGTTAGATGACATTAATGCTTTTCAACCATGCAAGATCACGGTTCTGAAGCTATGTGAAGATTTGCAATTAATAACTTTATTTGCATCTAAATACAAGATTTATGATGAAAACATGCCTCTGGAGAACTCTGAAATACAGAGTGCTCAATCTGAATTTGATGTTACTCCTATAAACAATAGCTCCCAGTCATGTGAAATCATAAATCTTGATTCTACTCAAGACATTGTTACCCCTAAGCGTTCTATAACGTCGTTAGAGTGTTCAAAAAATCTATCTGAAGTGTTTTCCGATCTGGATAACTCTTCATGCTCTAAATCCAGAAGAATTACAAAGGAGCCTACTATCTCTGTCGGCAAAGAGCACGTTGACTAG 2631 0.3732 MALIPDTTQGRSFFLEVSSEMDMGELPSNFYRRFHDELASLLTFADCAGNELQVLIEKGPRTGIIVNGFRNFSSFYGLKLGGWLKVSYVGSNHFIINEVIDHNMKVKEFSSPPFKVSLDIKPTVGFDSVIDISKESSLLSSVHVKDLSYKSPQPYSINESFYTVNSTNLLPSDNNNSVVPLDICLQLQSTPQILNTTHVPSFANDNFFDRAHYSNIPTQFHQEPLHFPFIHNEKQSNFSLDLYKTRCHSVMRTHPLSHDDYSFAIGNDISNSVSDFVLAHNPNPPNEFPLPPPPLPSSIVSPVVYSIVKVLSPFQSKHYAMLLPARFAVRAFSRKLDFVNVIQLTGPSIRMKLRWRDIRPNEDLDVSSDQQNWRIKVRVIKIWSLSAVEDKYRKPMLEFIVMDQLEPHRRLFENHIIDGSLYSISNFSLAINDQKYKPTTHSLRIYFKRETQLRRVEDINFPTNMFHFVPNELILSQQNPQSHLIDVMGLITAKGDIVEFSKNGKKSIYIVVELDDMQGKGTIRCTLWEEFATQLVQHIQDNPTTEYILIIQFAKFNLFKSAMGISNTNYNSLLYINPDFKEVKDFRQSFIMCNDQPRNALTQIPSHTAYSMEDDLLNRTPYKPICEIKELTDGGFYCTIGTVISVENKNGWWYKGCKLCYRALKEDESFYYCMFCDSFPNIHVPRFCVQVRVCDDTDNAAFVIYDKEASRYLGTSASDLRASQLSKGSSKDDIPDEINSFKGKKFLFKISVKLDDINAFQPCKITVLKLCEDLQLITLFASKYKIYDENMPLENSEIQSAQSEFDVTPINNSSQSCEIINLDSTQDIVTPKRSITSLECSKNLSEVFSDLDNSSCSKSRRITKEPTISVGKEHVD 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02599 876 Gene3D - 364 459 IPR012340 -
Aip02g02599 876 SUPERFAMILY Nucleic acid-binding proteins 621 770 IPR012340 -
Aip02g02599 876 SUPERFAMILY Nucleic acid-binding proteins 365 460 IPR012340 -
Aip02g02599 876 Pfam Replication factor-A C terminal domain 637 770 IPR013955 -
Aip02g02599 876 Gene3D - 460 597 IPR012340 -
Aip02g02599 876 PANTHER BNAC01G35430D PROTEIN 636 791 - -
Aip02g02599 876 PANTHER BNAC01G35430D PROTEIN 412 514 - -
Aip02g02599 876 SUPERFAMILY DNA-binding pseudobarrel domain 22 96 IPR015300 -
Aip02g02599 876 Gene3D - 612 778 IPR012340 -
Aip02g02599 876 PANTHER REPLICATION FACTOR A 1, RFA1 636 791 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip02g02599 876 SUPERFAMILY Nucleic acid-binding proteins 480 590 IPR012340 -
Aip02g02599 876 CDD RPA1_DBD_B_like 486 591 - -
Aip02g02599 876 PANTHER REPLICATION FACTOR A 1, RFA1 412 514 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip02g02599 876 CDD RPA1_DBD_C 627 769 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02599 Aip-Chr2 100813343 100819418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02599 345 767 Core DNA Replication Machinery Family AT5G08020 22.511 1.40e-17 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02599 - - adu:107490971 681.789