Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02588 ATGAATATTCGCTTGCTGTTATTGATTTTGTTTATATTTAAGGCCCATGGTCTTGCTCCTGAAATACCTGAAGATCTATACCACTTGATCAAGAAGGCTGTCTCAATCAGGAAGCACTTGGAGAGGAATAGGAAGGACAAGGACTCCAAATTCAAGTTGATTTTGGTAGAGAGCAGGATCCACCGCATTACACGTTACTACAAGAAGTCCAAGAAGCTTCCACCCGTTGAGAGGATCAGTGTTAGTAAGAGAACATGGTTGGCAGGGGTGGTTCGGGGACTGGCTCTGGGTGTGGCTCTGGCTCTGGCTCTGGCTCTGGGTCTGTGCAACCACAATTCATTGCGAGCACTGGCTCCAATACGAATACGCCCCTCATTGACAACTCAGATGTGGATCAAGTTGTTGTGCCTGATACCAGAAGCTGGAAAAATCTATTTTCTTACAAAGAATTTAGATCGCTACTCCTTCTCAAAGAATCCACCAAAAACTAGACAAAAGGACAAAGGGGAGCCTCTAGAAGAATTGTTTGAGATAGAGGATGGTAGTTTTGTGGTATGGGGAGACCGAAGGAAGATTTTTCTTCCTGATTTAGGATTTGTCCTTGTTGCTGGCAGTTTTGGTTGCCTTAGGAGAACTGTCTTAGATGAGAGGCTAAAATGCAATGAGTACTCTACTACAGCATTGACTGGAACCTTGCTTCACCAAATTTTTCAGGTTGGGCTCACAGAAGACAATCCATCTATTGACTTCTTGGAAGGTTACACAGAAGTGGTATTACTTAGGAACATTGAGAGTCTGTATGCTTGTGGAGTAAATGAAAGTGATGTTCGGAAAACCTTGATTGATGCTGTCCCGAGAATATTGAGTTGGATTTTACGGTTCACAAATAAGGAGGAAAATGAAGATCCTAATGTTTGTTTTGGATTTCACAATAGGCCTAACAAAGTTACCATATCTGAGGCAAGCTCTAATCTAACCGATTCGTTTTATCCATTAGATGATCTCAGAAAGGAAGGTAAGGTCGTTAGAGTCGGTTCGTTCGTTTCATGGGAACTTTTCAACGAGCAATCGGAAGCATACAAGGAGAGTGTTCTCCCTGCTGCTGTTTCAGCTATGTTTAGCATTGAGCATGGATCAAGATTTGGGTAG 1149 0.4265 MNIRLLLLILFIFKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRITRYYKKSKKLPPVERISVSKRTWLAGVVRGLALGVALALALALGLCNHNSLRALAPIRIRPSLTTQMWIKLLCLIPEAGKIYFLTKNLDRYSFSKNPPKTRQKDKGEPLEELFEIEDGSFVVWGDRRKIFLPDLGFVLVAGSFGCLRRTVLDERLKCNEYSTTALTGTLLHQIFQVGLTEDNPSIDFLEGYTEVVLLRNIESLYACGVNESDVRKTLIDAVPRILSWILRFTNKEENEDPNVCFGFHNRPNKVTISEASSNLTDSFYPLDDLRKEGKVVRVGSFVSWELFNEQSEAYKESVLPAAVSAMFSIEHGSRFG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02588 382 SUPERFAMILY TK C-terminal domain-like 333 382 IPR009014 GO:0003824
Aip02g02588 382 ProSitePatterns Ribosomal protein S15 signature. 36 66 IPR000589 GO:0003735|GO:0005840|GO:0006412
Aip02g02588 382 Gene3D - 20 85 - -
Aip02g02588 382 Pfam Ribosomal protein S15 15 71 IPR000589 GO:0003735|GO:0005840|GO:0006412
Aip02g02588 382 PANTHER RIBOSOMAL PROTEIN S15P/S13E 9 79 IPR023029 -
Aip02g02588 382 PANTHER 40S RIBOSOMAL PROTEIN S13 9 79 - -
Aip02g02588 382 SUPERFAMILY S15/NS1 RNA-binding domain 10 77 IPR009068 -
Aip02g02588 382 CDD Ribosomal_S15p_S13e 14 80 IPR000589 GO:0003735|GO:0005840|GO:0006412
Aip02g02588 382 SMART Ribosomal_S15_2 9 82 IPR000589 GO:0003735|GO:0005840|GO:0006412
Aip02g02588 382 Pfam DNA replication factor Dna2 202 319 IPR014808 -
Aip02g02588 382 Gene3D - 308 382 IPR009014 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02588 Aip-Chr2 100710360 100715520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02588 9 76 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 89.706 2.05e-36 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02588 K10742 - ahf:112730531 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02588 02 100710360 100715520 Aip02g02588 02 100710360 100715520 ECH