LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip02g02588	ATGAATATTCGCTTGCTGTTATTGATTTTGTTTATATTTAAGGCCCATGGTCTTGCTCCTGAAATACCTGAAGATCTATACCACTTGATCAAGAAGGCTGTCTCAATCAGGAAGCACTTGGAGAGGAATAGGAAGGACAAGGACTCCAAATTCAAGTTGATTTTGGTAGAGAGCAGGATCCACCGCATTACACGTTACTACAAGAAGTCCAAGAAGCTTCCACCCGTTGAGAGGATCAGTGTTAGTAAGAGAACATGGTTGGCAGGGGTGGTTCGGGGACTGGCTCTGGGTGTGGCTCTGGCTCTGGCTCTGGCTCTGGGTCTGTGCAACCACAATTCATTGCGAGCACTGGCTCCAATACGAATACGCCCCTCATTGACAACTCAGATGTGGATCAAGTTGTTGTGCCTGATACCAGAAGCTGGAAAAATCTATTTTCTTACAAAGAATTTAGATCGCTACTCCTTCTCAAAGAATCCACCAAAAACTAGACAAAAGGACAAAGGGGAGCCTCTAGAAGAATTGTTTGAGATAGAGGATGGTAGTTTTGTGGTATGGGGAGACCGAAGGAAGATTTTTCTTCCTGATTTAGGATTTGTCCTTGTTGCTGGCAGTTTTGGTTGCCTTAGGAGAACTGTCTTAGATGAGAGGCTAAAATGCAATGAGTACTCTACTACAGCATTGACTGGAACCTTGCTTCACCAAATTTTTCAGGTTGGGCTCACAGAAGACAATCCATCTATTGACTTCTTGGAAGGTTACACAGAAGTGGTATTACTTAGGAACATTGAGAGTCTGTATGCTTGTGGAGTAAATGAAAGTGATGTTCGGAAAACCTTGATTGATGCTGTCCCGAGAATATTGAGTTGGATTTTACGGTTCACAAATAAGGAGGAAAATGAAGATCCTAATGTTTGTTTTGGATTTCACAATAGGCCTAACAAAGTTACCATATCTGAGGCAAGCTCTAATCTAACCGATTCGTTTTATCCATTAGATGATCTCAGAAAGGAAGGTAAGGTCGTTAGAGTCGGTTCGTTCGTTTCATGGGAACTTTTCAACGAGCAATCGGAAGCATACAAGGAGAGTGTTCTCCCTGCTGCTGTTTCAGCTATGTTTAGCATTGAGCATGGATCAAGATTTGGGTAG	1149	0.4265	MNIRLLLLILFIFKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRITRYYKKSKKLPPVERISVSKRTWLAGVVRGLALGVALALALALGLCNHNSLRALAPIRIRPSLTTQMWIKLLCLIPEAGKIYFLTKNLDRYSFSKNPPKTRQKDKGEPLEELFEIEDGSFVVWGDRRKIFLPDLGFVLVAGSFGCLRRTVLDERLKCNEYSTTALTGTLLHQIFQVGLTEDNPSIDFLEGYTEVVLLRNIESLYACGVNESDVRKTLIDAVPRILSWILRFTNKEENEDPNVCFGFHNRPNKVTISEASSNLTDSFYPLDDLRKEGKVVRVGSFVSWELFNEQSEAYKESVLPAAVSAMFSIEHGSRFG	382

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip02g02588	382	SUPERFAMILY	TK C-terminal domain-like	333	382	IPR009014	GO:0003824
Aip02g02588	382	ProSitePatterns	Ribosomal protein S15 signature.	36	66	IPR000589	GO:0003735\|GO:0005840\|GO:0006412
Aip02g02588	382	Gene3D	-	20	85	-	-
Aip02g02588	382	Pfam	Ribosomal protein S15	15	71	IPR000589	GO:0003735\|GO:0005840\|GO:0006412
Aip02g02588	382	PANTHER	RIBOSOMAL PROTEIN S15P/S13E	9	79	IPR023029	-
Aip02g02588	382	PANTHER	40S RIBOSOMAL PROTEIN S13	9	79	-	-
Aip02g02588	382	SUPERFAMILY	S15/NS1 RNA-binding domain	10	77	IPR009068	-
Aip02g02588	382	CDD	Ribosomal_S15p_S13e	14	80	IPR000589	GO:0003735\|GO:0005840\|GO:0006412
Aip02g02588	382	SMART	Ribosomal_S15_2	9	82	IPR000589	GO:0003735\|GO:0005840\|GO:0006412
Aip02g02588	382	Pfam	DNA replication factor Dna2	202	319	IPR014808	-

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip02g02588	Aip-Chr2	100710360	100715520	Transposed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip02g02588	9	76	Cytoplasmic Ribosomal Protein Gene Family	AT4G00100	89.706	2.05e-36	128

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip02g02588	K10742		-	ahf:112730531	269.24

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip02g02588	02	100710360	100715520	Aip02g02588	02	100710360	100715520	ECH

Showing 1 to 1 of 1 entries

Previous1Next