Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02532 ATGAAGGATCCCGTAACCGTCTCCACCGGCATCACCTACGACAGAGAGAGCATCGAGACATGGCTCTTCTCCGATAAGAACAAGACCTGCTCCGTAACGAAGCAACAACTCTCTTCTTCTGATTTCTCCGATCTAATTCCAAACCACACTCTTGGCGGATTGATTCATTTATGGTGTACCATCAACGCTTCCCATGGCATCGAAAGAATTTCCACATCTAAACCACCGGTTAATAAAAACAAGATCTCAAAGCTCCTCAAAGATGAGGACATTGACGTAGAAGCTTGA 288 0.4514 MKDPVTVSTGITYDRESIETWLFSDKNKTCSVTKQQLSSSDFSDLIPNHTLGGLIHLWCTINASHGIERISTSKPPVNKNKISKLLKDEDIDVEA 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02532 95 Pfam U-box domain 1 60 IPR003613 GO:0004842|GO:0016567
Aip02g02532 95 SUPERFAMILY RING/U-box 1 65 - -
Aip02g02532 95 SMART Ubox_2 1 58 IPR003613 GO:0004842|GO:0016567
Aip02g02532 95 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 72 IPR013083 -
Aip02g02532 95 ProSiteProfiles U-box domain profile. 1 65 IPR003613 GO:0004842|GO:0016567
Aip02g02532 95 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 89 - -
Aip02g02532 95 PANTHER WDSAM1 PROTEIN 1 89 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02532 Aip-Chr2 99643252 99643539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02532 1 88 U-box Gene Family AT3G52450 64.773 5.43e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02532 - - ahf:112775650 160.614