Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02528 ATGGAGAAGCACAAATGCAAGTTATGCTTCAGAAACTTCTCTAATGGAAGAGCTTTGGGGGGACACATGAGGTCTCACATGATGAACCTCCACGTCCCTCCAAAGCCGAACGAATCGCCGCCGCCGTCGCCGCCTGCAATTCAACTCAGCTTCGAGGCTGAGTCGTCAACTCCGCTCTCACCATCGGCGTCGTCGTCATCTTATTTCGGAAAAGAAGACGATACGAGCTTGTACTATGGCCTCAGGGAGAATCCAAAGAGAAGCTTCAGGATCGCGGATCCTGAGTTCTCGTTCGTGGCTGCCGGAGACACCGGATCGGTTATACTCCAAGAAGATCGAGAGAGCGAAACGGAGTCTTCAAAGAACGTAACGAAGAAAAGATCCAAAAGAGCGTGGAAACTCGGCGGCGGCGGTGATGGTTTCAATAGCAAGAAGGTGAAACTGAGCCAACTCGGTAACGGCAACAACAAGAACGAGTCAGCGAGTTCGGCTTCCGATGCAACCACCGAAGAAGACATCGCATTATGGCTCATGATGCTGTCACGTGACACTGGTAACAATTGGAAGATTAATCACAAGATCAACATAAACATAGAAGAACAAGAACTGGAAGAAGAAGATTATGACGAAGAGGACGAAGACGAAGAGGAGGAAGAAGAGGACGAAGGCGAAGAGAGTGATGAGTATGAGGTTGTGAAGAACAAAGCGAAGTCGAATAAGGTGAGAGGAGGAAGGTACAAATGCGAGACGTGCAACAAAGTTTTTAGGTCTTATCAAGCATTGGGTGGCCATAGAGCGAGTCATAAGAAGATGAAAATGGATTACAACAATCATAATGATTCTGAATTCATGGTGGTAGAGGATCACGCTGATGAGAATGTTAACAACAATAATAATGAAGTTTTTGCTTCTTCTGCTTTGGCTTCCGTAGAAAACGGTAACAACAACAATGGTGGCAATAACAATAACAAGAAGATCCATGAATGTCCCGTTTGTTTTCGAGTTTTCGCCTCCGGTCAAGCTCTCGGTGGACACAAGAGAACTCATGTTACTACTGTCTCTACTCCCACTATCACTACCAGAGCAATAGCAGAAGTAAAAGCAGAAGCAGAAGCAATCGCTGCCTCCAAGGCCGCGGTTGCCACCGCTAGTTCCTCAAAGCTTGGAAGAGAGAGTTTCATAGATCTTAACCTCCCTGCCCCGGCCGAAGAAGATGATGCGAGCCAATTCGAGGATTCCGCGGTTTCGGATGCAGAGTTTGTGAATCCGGTGAAGGTTTTTCCTAGATGA 1290 0.4713 MEKHKCKLCFRNFSNGRALGGHMRSHMMNLHVPPKPNESPPPSPPAIQLSFEAESSTPLSPSASSSSYFGKEDDTSLYYGLRENPKRSFRIADPEFSFVAAGDTGSVILQEDRESETESSKNVTKKRSKRAWKLGGGGDGFNSKKVKLSQLGNGNNKNESASSASDATTEEDIALWLMMLSRDTGNNWKINHKININIEEQELEEEDYDEEDEDEEEEEEDEGEESDEYEVVKNKAKSNKVRGGRYKCETCNKVFRSYQALGGHRASHKKMKMDYNNHNDSEFMVVEDHADENVNNNNNEVFASSALASVENGNNNNGGNNNNKKIHECPVCFRVFASGQALGGHKRTHVTTVSTPTITTRAIAEVKAEAEAIAASKAAVATASSSKLGRESFIDLNLPAPAEEDDASQFEDSAVSDAEFVNPVKVFPR 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02528 429 SUPERFAMILY beta-beta-alpha zinc fingers 245 349 IPR036236 -
Aip02g02528 429 MobiDBLite consensus disorder prediction 146 168 - -
Aip02g02528 429 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Aip02g02528 429 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 422 - -
Aip02g02528 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 36 IPR013087 -
Aip02g02528 429 SMART c2h2final6 4 26 IPR013087 -
Aip02g02528 429 SMART c2h2final6 246 268 IPR013087 -
Aip02g02528 429 SMART c2h2final6 327 349 IPR013087 -
Aip02g02528 429 Gene3D Classic Zinc Finger 243 349 - -
Aip02g02528 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 327 349 IPR013087 -
Aip02g02528 429 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 422 IPR044303 GO:0006355
Aip02g02528 429 Coils Coil 191 221 - -
Aip02g02528 429 MobiDBLite consensus disorder prediction 109 168 - -
Aip02g02528 429 MobiDBLite consensus disorder prediction 200 227 - -
Aip02g02528 429 MobiDBLite consensus disorder prediction 27 70 - -
Aip02g02528 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 246 273 IPR013087 -
Aip02g02528 429 ProSitePatterns Zinc finger C2H2 type domain signature. 329 349 IPR013087 -
Aip02g02528 429 MobiDBLite consensus disorder prediction 200 236 - -
Aip02g02528 429 MobiDBLite consensus disorder prediction 49 70 - -
Aip02g02528 429 MobiDBLite consensus disorder prediction 109 125 - -
Aip02g02528 429 Pfam C2H2-type zinc finger 245 270 - -
Aip02g02528 429 Pfam C2H2-type zinc finger 4 27 - -
Aip02g02528 429 Pfam C2H2-type zinc finger 327 349 - -
Aip02g02528 429 ProSitePatterns Zinc finger C2H2 type domain signature. 248 268 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02528 Aip-Chr2 99524635 99526319 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02528 1 408 C2H2 Transcription Factor Family AT3G60580 39.423 3.40e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip02g02528 zf-C2H2_6 1.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02528 - - adu:107475462 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02528 02 99524635 99526319 Aip02g02528 02 99524635 99526319 ECH