Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02523 ATGAAGGTTCACACGTTTAATGTTGTAGTTCTTTACTGTATGCTCTTAATATGCACTTGTTATGGCTTCAACCCCAAACTATCGTTCTATAATTCTTCCAAAGTTGATGCAAATGCAGAACAATGGCAACCAGCATCAGCTACATGGTATGGACCGCCAGATGGCGCTGGAACAGATGGTGGTGCTTGTGGATATGGTAGTAGTGTGGGGAATCCTCCACTCTCTAAATTGGTATCAGCTGGTGGCCCTAATATTTTCAACAATGGCGAAGGATGTGGCGCTTGTTATGAGGTGAAATGCACAGAAAATGAAGCATGCTCTGGTGAAACAGTGACAGTGATGATATCAGATCAATGCCCTGGATGTCCAGCCATTCATTTCGATCTCAGTGGCTTTGCTTTTGGTTCATTGGCAAAACCAGGGCAGCAAGATAATCTTCGCAATGCTGGACGCATAAACCTTCAATATCAAAGGGTTTCATGCTCATTTGGACAGCCAATAGTATTCACCATAGATAATGGGGCAAACCAATACTACTTTGCAACCGAAATTGAATATGAAAACGGGGATGGAAATCTTGTGGATGTAAAATTGAAGCAAGCAAATAAAGATTCATGGATTCCAATGAAACGTTTATGGGGTGCAAGATGGGTTCTCAACCTTGGTTCTTTAATGCAGCCTCCATTTTCTCTTGAGCTCACTGAGACTTCTGCCACTGGCTCCAGCAAGACCATTGAAGCTAACAATGTTATCCCTGATGGTTGGCAACCTGGCCAAGTTATTCGATCAGCCATAAACTTTAATAATTAG 810 0.4235 MKVHTFNVVVLYCMLLICTCYGFNPKLSFYNSSKVDANAEQWQPASATWYGPPDGAGTDGGACGYGSSVGNPPLSKLVSAGGPNIFNNGEGCGACYEVKCTENEACSGETVTVMISDQCPGCPAIHFDLSGFAFGSLAKPGQQDNLRNAGRINLQYQRVSCSFGQPIVFTIDNGANQYYFATEIEYENGDGNLVDVKLKQANKDSWIPMKRLWGARWVLNLGSLMQPPFSLELTETSATGSSKTIEANNVIPDGWQPGQVIRSAINFNN 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02523 269 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Aip02g02523 269 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Aip02g02523 269 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Aip02g02523 269 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Aip02g02523 269 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Aip02g02523 269 SMART dpbb_1 78 156 IPR007112 -
Aip02g02523 269 PANTHER EXPANSIN-LIKE PROTEIN B1 7 269 - -
Aip02g02523 269 SUPERFAMILY Barwin-like endoglucanases 38 163 IPR036908 -
Aip02g02523 269 SUPERFAMILY PHL pollen allergen 166 260 IPR036749 -
Aip02g02523 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 263 IPR007117 -
Aip02g02523 269 Pfam Expansin C-terminal domain 167 252 IPR007117 -
Aip02g02523 269 Gene3D - 27 162 IPR036908 -
Aip02g02523 269 Pfam Lytic transglycolase 79 156 IPR009009 -
Aip02g02523 269 PRINTS Major pollen allergen Lol pI signature 80 91 IPR005795 GO:0005576|GO:0019953
Aip02g02523 269 PRINTS Major pollen allergen Lol pI signature 100 110 IPR005795 GO:0005576|GO:0019953
Aip02g02523 269 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576|GO:0019953
Aip02g02523 269 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Aip02g02523 269 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Aip02g02523 269 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576|GO:0019953
Aip02g02523 269 PANTHER EXPANSIN-B3 7 269 - -
Aip02g02523 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 166 IPR007112 -
Aip02g02523 269 Gene3D - 163 268 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02523 Aip-Chr2 99400785 99404819 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02523 23 267 Expansin Gene Family AT1G65680 48.193 1.97e-83 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02523 - - gmx:100786475 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02523 02 99400785 99404819 Aip02g02523 02 99400785 99404819 ECH