Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02522 ATGCTTTTAAGCACTACTTGCTATTGCATCAACCCCAAATTTTTCAATCCTTCCAAAGTTGCAAATGATGAGAAACCATGGAACCAAACACAAGCTACATGGTATGGAGCCCCCGATGGTGCTGGATCAGATAGTGGTGCATGTAATTATGGTAAAACTGTAGAGAGTCCTCCGATCTCTAAATTAACCGTGGCGGCTGGTAATTTTATTTTTCGCAAGGGCTATGGATGTGGTTCTTGTTATGAGGTGAAATGCACAGATAATGCAGCATGTTCAGGAAAGTCCGTGACGGTGGTGGTAAGTGATGAATGCTCATCGTGTTCAGGATACCATTTCAATCTCAGTGGCGCCGCTTTTGCTTCCATCGCAAATCCAGGTCAACAAGATACTCTTCGCAAACTTGGACAAGTCAACCTTCAATACAGAAGGGTTTCATGCTCATTTGGGAATTTTGTAGCAGTGAGGATCGGTGAAAACTCTAGACCACCAACTTACATGGAAGCATCAATCGAATATGTAAATGGAGATGCAGAATACATTGATTTAGAAGTTCGTGATCAAAGTTTTCTTACCGTTTCTCGTGTGGGGGGTGCAACATGGAGTTTCTTTTTCGCCGGTTATAATTTGCAACCTCCAATGACTTTAACGCTCACTCAACGTTATTCCAATGGCACCAAAGGAAATACCATTCAACTTCCTAATATCATCCCAATTGATTGGAAGATTGGTCAAGTTTATCAATCAAAGACAAATTTCTAG 759 0.4137 MLLSTTCYCINPKFFNPSKVANDEKPWNQTQATWYGAPDGAGSDSGACNYGKTVESPPISKLTVAAGNFIFRKGYGCGSCYEVKCTDNAACSGKSVTVVVSDECSSCSGYHFNLSGAAFASIANPGQQDTLRKLGQVNLQYRRVSCSFGNFVAVRIGENSRPPTYMEASIEYVNGDAEYIDLEVRDQSFLTVSRVGGATWSFFFAGYNLQPPMTLTLTQRYSNGTKGNTIQLPNIIPIDWKIGQVYQSKTNF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02522 252 Pfam Lytic transglycolase 68 140 IPR009009 -
Aip02g02522 252 SMART dpbb_1 63 141 IPR007112 -
Aip02g02522 252 Pfam Expansin C-terminal domain 152 237 IPR007117 -
Aip02g02522 252 Gene3D - 151 252 IPR036749 -
Aip02g02522 252 PANTHER EXPANSIN-B3 2 252 - -
Aip02g02522 252 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Aip02g02522 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Aip02g02522 252 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Aip02g02522 252 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Aip02g02522 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Aip02g02522 252 SUPERFAMILY PHL pollen allergen 152 248 IPR036749 -
Aip02g02522 252 PANTHER EXPANSIN-LIKE PROTEIN B1 2 252 - -
Aip02g02522 252 PRINTS Major pollen allergen Lol pI signature 65 76 IPR005795 GO:0005576|GO:0019953
Aip02g02522 252 PRINTS Major pollen allergen Lol pI signature 224 241 IPR005795 GO:0005576|GO:0019953
Aip02g02522 252 PRINTS Major pollen allergen Lol pI signature 123 138 IPR005795 GO:0005576|GO:0019953
Aip02g02522 252 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576|GO:0019953
Aip02g02522 252 PRINTS Major pollen allergen Lol pI signature 101 116 IPR005795 GO:0005576|GO:0019953
Aip02g02522 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 151 IPR007112 -
Aip02g02522 252 SUPERFAMILY Barwin-like endoglucanases 25 148 IPR036908 -
Aip02g02522 252 Gene3D - 13 147 IPR036908 -
Aip02g02522 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 248 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02522 Aip-Chr2 99383823 99386753 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02522 8 252 Expansin Gene Family AT1G65680 37.698 1.82e-59 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02522 - - ahf:112728471 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03070 06 125695246 125697793 Aip02g02522 02 99383823 99386753 PCT