Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02521 ATGCTTTTAAGCACTAGTTGTTATTGCATCAACCCCAAATTTTTCAATCCTTCCAAAGTTGCAAATGATGAGAAACTATGGAACCAAACACAAGCTACATGGCATGGAACCCCTGATGGTGCTGGATCAGATAATGGTGCATGTAATTACGGTAAAACTGTGGAGAGTCCTCCAATCTCTAAATTGACAGCGGCTGCTGGTAGTTCTATTTTTCGCAAAGGCTATGGATGTGGTTCTTGTTATGAGGTGAAATGCACAGATAATGCAGCATGTTCAGGGAAGTCAGTGACGGTGGTGGTAAGTGATGAATGCCCATCGTGTTCAGGATACCATTTCAATCTCAGTGGCGTCGCTTTTGCTTCCATCGCAAATCCAGGTCAACAAGATACTCTTCGCAAACTTGGACAAGTCAACCTTCAATACAGAAGGGTTTCATGCTCATTTGGGAATTCTATAGCAGTGAGGATCGGTGAAAACTCTAGACCACCAACTTACATGGAAGCATCAATCGAATACGTAAATGGAGATGCAGACTACATTGATTTAAAAGTTCGTGATCAAAGTTTCCTTACTGTTTCTCGTTTGGGGGGTGCAACATGGAGTTTCTTTTTTGCTGGTTATAATTTGCAACCTCCAATGACTTTAACACTCACTCAACGTTATTCCAATGGCACCAAAGGAAAGACCATTCAACTTCCTAATATCATCCCAGTTGATTGGAAGATTGGTCAAGTTTATCAATCAAAGACAAATTTTTAG 759 0.4084 MLLSTSCYCINPKFFNPSKVANDEKLWNQTQATWHGTPDGAGSDNGACNYGKTVESPPISKLTAAAGSSIFRKGYGCGSCYEVKCTDNAACSGKSVTVVVSDECPSCSGYHFNLSGVAFASIANPGQQDTLRKLGQVNLQYRRVSCSFGNSIAVRIGENSRPPTYMEASIEYVNGDADYIDLKVRDQSFLTVSRLGGATWSFFFAGYNLQPPMTLTLTQRYSNGTKGKTIQLPNIIPVDWKIGQVYQSKTNF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02521 252 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Aip02g02521 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Aip02g02521 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Aip02g02521 252 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Aip02g02521 252 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Aip02g02521 252 Pfam Lytic transglycolase 64 140 IPR009009 -
Aip02g02521 252 Gene3D - 14 147 IPR036908 -
Aip02g02521 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 151 IPR007112 -
Aip02g02521 252 PRINTS Major pollen allergen Lol pI signature 224 241 IPR005795 GO:0005576|GO:0019953
Aip02g02521 252 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576|GO:0019953
Aip02g02521 252 PRINTS Major pollen allergen Lol pI signature 65 76 IPR005795 GO:0005576|GO:0019953
Aip02g02521 252 PRINTS Major pollen allergen Lol pI signature 123 138 IPR005795 GO:0005576|GO:0019953
Aip02g02521 252 PRINTS Major pollen allergen Lol pI signature 101 116 IPR005795 GO:0005576|GO:0019953
Aip02g02521 252 PANTHER EXPANSIN-LIKE PROTEIN B1 2 252 - -
Aip02g02521 252 Gene3D - 150 252 IPR036749 -
Aip02g02521 252 PANTHER EXPANSIN-B3 2 252 - -
Aip02g02521 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 248 IPR007117 -
Aip02g02521 252 Pfam Expansin C-terminal domain 152 237 IPR007117 -
Aip02g02521 252 SUPERFAMILY Barwin-like endoglucanases 27 148 IPR036908 -
Aip02g02521 252 SUPERFAMILY PHL pollen allergen 151 248 IPR036749 -
Aip02g02521 252 SMART dpbb_1 63 141 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02521 Aip-Chr2 99365969 99368970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02521 8 252 Expansin Gene Family AT1G65680 38.492 6.89e-62 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02521 - - ahf:112728471 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02521 02 99365969 99368970 Aip02g02521 02 99365969 99368970 ECH