Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02518 ATGCTTTTAAGCACTACTTGCTATTGCATCAACCCCAAATTTTTCAATCCTTCAAAAGTTCCAAATGATGAAAAACCATGGGACCAAACACAAGCTACATGGTATGGAACCCCCGATGGTGCTGGTTCAGATAGTGGTGCATGTAGTTATGGTAAAACTGTGGAGAGTCCTCCAATTTCTAAATTGACAGCGGCTGTAGGCCATTATATTTTTCGTCAAGGTTATGGATGTGGTGCTTGTTACGAGGTGAAATGCACAGATAATGCAGCATGTTCAGGGAAGCCAGTGACAGTGGTGGTAAGTGATGAATGCCCATCGTGTTCAGGATACCATTTCAATCTCAGTGGCGCCGCTTTTGCTTCCATTGCAAATCCAGGTCAACAAGATATTCTTCGTAAACTTGGACAAGTCAACCTTCAATACAGAAGGGTTTCATGCTCATTTGGACGTTCTATAGCATTTAGAATGGGTGAAAATTCTGAACCAAATAAATTAGAAGTATCAATGGAATACGTAAATGGAGATGCAGATATTCATATAGAAAATGGTCCTGAACAAGGTTTAGAGATTTCTCATGTGTGGGGTGCAACTTGGAGTGTTTTTGCTGGTGGTTATGCTATACAACCTCCATTCAATTTTACACTCGTTCAACGTTATCCCGATGGCACCAAAGGAAAGACCATTCTGGTTCCTAATATATTCACACAGGATTGGAAGATCGGTCAAGTTTATCAATCAACGATAAATTTCTAG 753 0.4037 MLLSTTCYCINPKFFNPSKVPNDEKPWDQTQATWYGTPDGAGSDSGACSYGKTVESPPISKLTAAVGHYIFRQGYGCGACYEVKCTDNAACSGKPVTVVVSDECPSCSGYHFNLSGAAFASIANPGQQDILRKLGQVNLQYRRVSCSFGRSIAFRMGENSEPNKLEVSMEYVNGDADIHIENGPEQGLEISHVWGATWSVFAGGYAIQPPFNFTLVQRYPDGTKGKTILVPNIFTQDWKIGQVYQSTINF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02518 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 246 IPR007117 -
Aip02g02518 250 Pfam Expansin C-terminal domain 152 230 IPR007117 -
Aip02g02518 250 PANTHER EXPANSIN-LIKE PROTEIN B1 2 250 - -
Aip02g02518 250 Gene3D - 14 147 IPR036908 -
Aip02g02518 250 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Aip02g02518 250 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Aip02g02518 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Aip02g02518 250 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Aip02g02518 250 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Aip02g02518 250 SMART dpbb_1 63 141 IPR007112 -
Aip02g02518 250 SUPERFAMILY PHL pollen allergen 150 246 IPR036749 -
Aip02g02518 250 PRINTS Major pollen allergen Lol pI signature 222 239 IPR005795 GO:0005576|GO:0019953
Aip02g02518 250 PRINTS Major pollen allergen Lol pI signature 85 95 IPR005795 GO:0005576|GO:0019953
Aip02g02518 250 PRINTS Major pollen allergen Lol pI signature 123 138 IPR005795 GO:0005576|GO:0019953
Aip02g02518 250 PRINTS Major pollen allergen Lol pI signature 154 169 IPR005795 GO:0005576|GO:0019953
Aip02g02518 250 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576|GO:0019953
Aip02g02518 250 Gene3D - 148 250 IPR036749 -
Aip02g02518 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 151 IPR007112 -
Aip02g02518 250 PANTHER EXPANSIN-B3 2 250 - -
Aip02g02518 250 SUPERFAMILY Barwin-like endoglucanases 26 148 IPR036908 -
Aip02g02518 250 Pfam Lytic transglycolase 64 140 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02518 Aip-Chr2 99296857 99300742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02518 8 250 Expansin Gene Family AT1G65680 40.239 2.77e-65 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02518 - - ahf:112728471 439.499