Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02513 ATGATGCAAGTGCTGTTATTCTTCCTGTCCCATTTTCTAGTTCTATTTGGTCAAGTGATCTCAACAGACACAGTTTTCAATGATGATGTTCTGGGGTTGATTGTGTTCAAAGCTGCTCTACAAGACCCAAATGGGAAACTCACTTCTTGGAATGAAGATGATAACAACCCTTGCAACTGGGTTGGTGTGAAATGTGACCCTTCAACTAATAGGGTAAATGCCCTTGTTCTTGATGGATTCTCTCTTTCTGGCCACATTGATAGAGGCCTATTGAGATTGCAGAACCTTCAGATTTTGTCACTTGCTAGGAACAACTTCACAGGGAGCATAAACCCTGATCTTACCAGCCTTGGGAATTTGCAAGTTCTTGATTTCAGTGAGAACAATCTATATGGACCAATCCCAAATGGTTTTTTCCAACAATGCTGGTCTCTGAGATCAGTTTCATTTGCAAATAACAACCTTTCAGGTAAAGTTCCCGAGTCTTTGAGTTCATGCACTTCATTGGAAACTCTAAACTTTTCCTCTAATCAGCTACATGGTGAATTGCCATCCGGGATATGGTATCTGAAGGGTCTGCAATCATTTGATTTTTCAAGTAACCTGCTAGAAGGAGAGATTCCTGAAGGAATTCAGAATCTGTATGATTTGAAGGAGTTAAGGCTTGGCAAGAACCGACTCTCCGGCCGGCTTCCGGAGGACATTGGAGGCTGCTTGCTGTTAAAGTTTATTGATTTCAGTGATAATTTTCTCTCTGGGAAAATTCCTGAGTCAATGCAAAGGCTCACCTCATGCACATCACTCAGTTTGCAGGGGAATTCGTTCACCGATCACATTCCGGATTGGATTGGAGAATTGAAGAGTTTGGAGATATTGGACCTTTCTAACAACAGATTTTCTGGTTGGATTCCAAAATCAATTGGAAATGTTGATTCACTGAGTGTGTTGAATTTATCCAGGAATGAGATCACTGGGAACATACCAGATTCAATGATAAACTGCAACAAGCTTTTGGTTCTTGACATTAGTCACAATCACATGGCAGGGATCCTTCCTTCATGGATATTCAAGATGGGGTTGCAAAGTATCTCACTTTCTGAAAACAACTTGAGAAAATCCATACCTGTTTCTTATCATGGTCTTCAGATTTTGGATTTGTCATCAAATGCATTTTCTGGCAAAATTCCATTCAGCATTGGAGGACTCAGTAGCTTGCAAGTGTTGAATTTGTCAACCAATAACATCTCTGGCACTATTCCAGTAAGCATAGGAGAACTCAAATCTTTGTACATTCTTGACTTGAGTGGGAACAAGCTCAATGGAAGCATTCCTAATGAAATAGAAGGTGCAGTTTCTCTCAGTGAACTGAGGCTACAAAAGAACTTGTTGAGTGGAAGAATTCCAAGACAAATTGAGAAGTGTTCATCCTTAACATCCTTGAATCTTTCACACAACAAGCTTATTGGTTCAATCCCTGCACCAATTGCAAATCTAACCAATCTTCAGTATTTAGATTTGTCATGGAATGAACTCTCTGGAAGCTTACCAAAGGAGCTAACAAATCTTTCCCAAATTTCATCATTCAATGTTTCTCACAATCATCTTCAAGGAGAGTTACCAGTTGGTGGTTTCTTTGATACCATATCTCCCTCTTCTATCTCTGGTAATCCATTGTTATGTGGTTCTGTCTTCAATCACTCCTGCACCATTGACCATCAAAAACCAATTGTCCTGAATCCGAATTCTTCTTACTCCAACTCAGGAGCATCCTCACAAAACCGCCATCATAAAATCATCCTCAGTATATCTGCACTTATAGCTATTGGTGCAGCTGTTTTCATTGCCATTGGTGTGGTGGTAGTTACTGTTCTAAACATCCATGTGAGGTCCTCAACTTCGCATTCACCGGCTCAATTTGCATTATCCGGTGGTGGCGACGAAGACTATAGTGGTTCGCCCGTGAAGGATCCAAACTATGGCAAGCTAGTTATGTTTTCCGGCCATGCAGAGTTTGCTGATGGGGCTAATAATCTTCTAAACAAAGACAGCGAAATCGGCCGTGGTGGATTCGGAGTTGTTTATTGCACTGTCCTTCGCGACGGCCGTTCTGTTGCAATCAAGAAGCTTACAATCTCTGGTTTGATAAAGTCACAAGAAGATTTTGAGAAGGAAGTTAAGATTCTAGGGGAGATCAAGCACCAGAATCTTGTAGCACTTGAAGGTTATTATTGGACTTCATCATTGCAGCTTCTTATTTATGAGTATTTATCCAGAGGGAGTTTGCATAAGCTTCTACATGATGAAAATAGCAAGAAAGTTGTGCTTTCTTGGCAACAAAGATTCAAGATTATTCTTGGCATGGCAAGAGGTTTGGCCTATTTGCACAAACTCAACATGATCCACTACAATCTAAAATCAAACAATGTTCTAATAGATTGTTCTTATGAGCCTAGAATTGGAGACTTTGGCCTTGTGAGGCTATTGCCAATGCTGGATCATTATGTCTTGAGCAGCAAGATACAGAGTGCACTTGGATACATGGCTCCGGAATTCGCCTGCCGGACGGTTAGGATCACGGAGAAGTGCGACGTGTACGGCTTCGGAGTCCTTGTTCTTGAGGTGGTGACAGGGAGAAAGCCTGTGGAGTACATGGAGGATGATGTGGTTGTGCTTTGTGACATGGTGAGAGGTGCATTGGAAGGAGACAAGTTAGAGCAGTGTGTTGATGAGAGGCTTTTTGGTAATTTTGCAGCAGAGGAAGCAGTTCCTCTGTTGAAATTAGGGTTGGTTTGTGCTTCACAAGTTCCATCAAACCGTCCAGATATGGCTGAGGTTGTCAACATTCTTGAAATGATCCAATGCCCTTCAGAAGGACAAGAAGAAATACAAATAAGTTCTTGA 2901 0.4137 MMQVLLFFLSHFLVLFGQVISTDTVFNDDVLGLIVFKAALQDPNGKLTSWNEDDNNPCNWVGVKCDPSTNRVNALVLDGFSLSGHIDRGLLRLQNLQILSLARNNFTGSINPDLTSLGNLQVLDFSENNLYGPIPNGFFQQCWSLRSVSFANNNLSGKVPESLSSCTSLETLNFSSNQLHGELPSGIWYLKGLQSFDFSSNLLEGEIPEGIQNLYDLKELRLGKNRLSGRLPEDIGGCLLLKFIDFSDNFLSGKIPESMQRLTSCTSLSLQGNSFTDHIPDWIGELKSLEILDLSNNRFSGWIPKSIGNVDSLSVLNLSRNEITGNIPDSMINCNKLLVLDISHNHMAGILPSWIFKMGLQSISLSENNLRKSIPVSYHGLQILDLSSNAFSGKIPFSIGGLSSLQVLNLSTNNISGTIPVSIGELKSLYILDLSGNKLNGSIPNEIEGAVSLSELRLQKNLLSGRIPRQIEKCSSLTSLNLSHNKLIGSIPAPIANLTNLQYLDLSWNELSGSLPKELTNLSQISSFNVSHNHLQGELPVGGFFDTISPSSISGNPLLCGSVFNHSCTIDHQKPIVLNPNSSYSNSGASSQNRHHKIILSISALIAIGAAVFIAIGVVVVTVLNIHVRSSTSHSPAQFALSGGGDEDYSGSPVKDPNYGKLVMFSGHAEFADGANNLLNKDSEIGRGGFGVVYCTVLRDGRSVAIKKLTISGLIKSQEDFEKEVKILGEIKHQNLVALEGYYWTSSLQLLIYEYLSRGSLHKLLHDENSKKVVLSWQQRFKIILGMARGLAYLHKLNMIHYNLKSNNVLIDCSYEPRIGDFGLVRLLPMLDHYVLSSKIQSALGYMAPEFACRTVRITEKCDVYGFGVLVLEVVTGRKPVEYMEDDVVVLCDMVRGALEGDKLEQCVDERLFGNFAAEEAVPLLKLGLVCASQVPSNRPDMAEVVNILEMIQCPSEGQEEIQISS 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02513 966 Gene3D Phosphorylase Kinase; domain 1 659 755 - -
Aip02g02513 966 SMART LRR_typ_2 402 424 IPR003591 -
Aip02g02513 966 SMART LRR_typ_2 426 450 IPR003591 -
Aip02g02513 966 SMART LRR_typ_2 286 309 IPR003591 -
Aip02g02513 966 SMART LRR_typ_2 310 334 IPR003591 -
Aip02g02513 966 SMART LRR_typ_2 214 238 IPR003591 -
Aip02g02513 966 SMART LRR_typ_2 117 141 IPR003591 -
Aip02g02513 966 SMART LRR_typ_2 166 190 IPR003591 -
Aip02g02513 966 SMART LRR_typ_2 498 522 IPR003591 -
Aip02g02513 966 ProSitePatterns Protein kinases ATP-binding region signature. 685 708 IPR017441 GO:0005524
Aip02g02513 966 Gene3D Ribonuclease Inhibitor 288 571 IPR032675 -
Aip02g02513 966 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 954 - -
Aip02g02513 966 Pfam Protein tyrosine and serine/threonine kinase 680 889 IPR001245 GO:0004672|GO:0006468
Aip02g02513 966 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Aip02g02513 966 ProSiteProfiles Leucine-rich repeat profile. 500 523 IPR001611 GO:0005515
Aip02g02513 966 ProSiteProfiles Protein kinase domain profile. 679 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip02g02513 966 Pfam Leucine rich repeat 288 346 IPR001611 GO:0005515
Aip02g02513 966 Pfam Leucine rich repeat 476 535 IPR001611 GO:0005515
Aip02g02513 966 Pfam Leucine rich repeat 380 439 IPR001611 GO:0005515
Aip02g02513 966 CDD STKc_IRAK 685 950 - -
Aip02g02513 966 Gene3D Transferase(Phosphotransferase) domain 1 756 961 - -
Aip02g02513 966 SUPERFAMILY L domain-like 287 553 - -
Aip02g02513 966 SUPERFAMILY Protein kinase-like (PK-like) 681 953 IPR011009 -
Aip02g02513 966 Gene3D Ribonuclease Inhibitor 184 282 IPR032675 -
Aip02g02513 966 SUPERFAMILY L domain-like 42 375 - -
Aip02g02513 966 Gene3D Ribonuclease Inhibitor 27 183 IPR032675 -
Aip02g02513 966 ProSiteProfiles Leucine-rich repeat profile. 476 499 IPR001611 GO:0005515
Aip02g02513 966 Pfam Leucine Rich repeat 165 182 IPR001611 GO:0005515
Aip02g02513 966 SMART LRR_sd22_2 426 449 - -
Aip02g02513 966 SMART LRR_sd22_2 498 524 - -
Aip02g02513 966 SMART LRR_sd22_2 93 122 - -
Aip02g02513 966 SMART LRR_sd22_2 286 312 - -
Aip02g02513 966 SMART LRR_sd22_2 190 213 - -
Aip02g02513 966 PRINTS Leucine-rich repeat signature 429 442 - -
Aip02g02513 966 PRINTS Leucine-rich repeat signature 498 511 - -
Aip02g02513 966 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02513 Aip-Chr2 99194204 99198634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02513 2 962 Receptor kinase-like Gene Family AT3G56370 59.006 0.0 1081
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Aip02g02513 PK_Tyr_Ser-Thr 3.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02513 - - gmx:100791204 1454.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02513 02 99194204 99198634 Aip02g02513 02 99194204 99198634 ECH
Aip04g02447 04 110393126 110397236 Aip02g02513 02 99194204 99198634 PCT