Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02482 ATGGAGTCAAGGAGCTGCATGAACGTGGTATGCGCCACCTTGACGTCGATTCAATGGCGCAAAGGTTGGGCCTTGCGATCCGGCGAATTTGCCGATCTCTGTGATAAGTGCGGTTCTGCATATGAGCAATCAACATTTTGTGAAAAATTCCACTCAAATGATTCTGGTTGGAGAGAGTGTGTTTCATGTGGCAAGCGTCTACATTGTGGATGCATTGCCTCTAGGTCTCAGCTTGAGTTGCTAGATTCCGGTGGTGTAAGCTGTATAAATTGCACAAGAAATTCAGGACATCAACTTGTTGCGGGTACTGAAAAGCCTACTGGCTCTGGGGCATCAAAGATAAAGAACGTCAGTGAACAACTGTGTCCATCTCTGGCTAACCAATTAAATGTCAGGGGTATGCAAGTAGGACATTCCACAGATAGTGATGGGCTGAGATGGTGGCTTAAACCTCATAATCCTGATGCAAATGTCCCTTTTCCAGAGATAAAAACAGAGGAAGGTTTGCCTTCTACTGCAGAACTTGGAAGCCAATTGATATCACAATTTCGCTGCAAATCTAATGGTTCATCTAGGGTTGCCAAATCAGACAACTGCCAGGCAGATATGGAGATGCAAGATATATATGAATCATTGGCACATGCAAATTTGAGTATGACTCTTGCTTCTCCTTCAGGAAATCCAAATCCCTTTCATAGTGCCATTGCTGATGAAAGGGAACAAAGTAAAACCTCGCCTCCACTTTTACTTGGGTCTAGGTCTCGCCACCTTTTACCAAAGCCTCCTAGGTCAAGCCTTGGTTCAAGCTTAGAAACAAATGCAGCTATGGTGTCCCAAATCCGTGTAGCAAGGCCTCCTGCCGAGGGACGTGGAAGAAATCAGCTACTTCCCCGTTACTGGCCTAGGATTACAGATCAAGAGTTGCAACAAATATCAGGAGATTCAAATTCCACCATTGTGCCACTCTTTGAGAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTAGTTTTACCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCAGAGGGCCTTCCTCTACGAATCCAAGATGTGAAAGGAAAAGAATGGGTGTTCCAGTTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTCTAGAAGGTGTAACTCCTTGTATTCAGTCTATGCAACTGCAAGCTGGAGATACTGTAACTTTTAGCCGGATGGACCCTGAAGGGAAACTTATTATGGGGTTTAGGAAGGCAACAAATTCTGCTGCAGTACAGGAATCTCATCCATCTAATATGCCCAATGGCTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTATTCTGGCCTTCTCCAGTCACAAAAGGGAAGTTCAGAATCCCCGCTAAATACGCTGTCTAAAAAATGGAATTCAGCTGGTGGTGACATGAATTGGCATAATATTGAAATTCCTGAAAAAAGGACAAGGGAGGGATCATTTTTGCCGCCTGTGCTGGTTCCAGAGAAGAAAAAAACCAGGAATATTGGATCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCGCTGGAGTTGAAGCTTACATGGGAAGAGGCACAGGATTTGCTTCGTCCTCCTCCAACTGCTAAACCAAGCATTGTCATGATTGAGGATCATGTATTTGAAGAATATGAAGAACCTCCTGTCTTTGGAAAGAAGAGTATATTCGTAGCCCGCTCTGCTGGGATAAATGAGCAGTGGACACAGTGTGATAATTGCTCAAAATGGAGGAAGTTACCAGTTGATGTACTTGTTCCCCCTAAGTGGACATGTGCTGATAACTTGTGGGATCAGAGCAGGCGTGCATGTTCTGCTCCAGACGAATTGAGCCCAAGGGAGATGGATAATCTCTTGCGACTGATCAAGGAATTCAAGAAACAGCGAATGACTGCCAGCCAAAGACCAACCTTAGAACATGAATCTTCCGGATTGGATGCTTTGGCAAATGCTGCAATACTTGGAGATGATGCAGGTGACCCTAGCAGAGCACCAGTTGCTGCCACTACGAAGCACCCTCGGCATAGACCTGGTTGCTCCTGTATTGTATGTATCCAACCACCGAGTGGGAAGGGCAAGCACAAACCTACATGCACCTGTAACGTGTGCATGACAGTAAAACGTAGGTTTAAAACCCTTATGATGCGAAAGAAGAAGCGGCAATCTGAGCGTGAAGCAGAGATTGCTCAGAGAAATCAGCAGTCATGGGTGACCAAGGATGAATCTGAAGTAGAAAGCACCTCTCAGCATTTAACTCGAGGTGATGGTTCGGAGAATGAAGCAAGGGTGCCAAACGAGTTAGATTCAAGGAGTCAAGACCATGCGGATGATGCAGCCAAGGGACACTTAGATTTGAACTGCCAACCTGATCGAGAAGATGCTCAAGCTGGGACAAACAGCATGAGCATGATGAGTCTTCTTGAAGAAGCAAATCTGCCATTGGAGACCTACCTGAAGAAAAATGGTCTTACTAGCTTGATGTCAGAACAGGAAACAAATTCAGCCTCAAATATGCAGGCACAGACGACCAATGACAGTGAGGGAAAACAAAATGAGGATTGTTGTACTCCTTCTGCTGTTCAGGAGCAGGAAAGCAGTCCCGAAGAGAGCAGTGAGCAAGACAAAGGCCAAAACAATTCATGA 2721 0.4476 MESRSCMNVVCATLTSIQWRKGWALRSGEFADLCDKCGSAYEQSTFCEKFHSNDSGWRECVSCGKRLHCGCIASRSQLELLDSGGVSCINCTRNSGHQLVAGTEKPTGSGASKIKNVSEQLCPSLANQLNVRGMQVGHSTDSDGLRWWLKPHNPDANVPFPEIKTEEGLPSTAELGSQLISQFRCKSNGSSRVAKSDNCQADMEMQDIYESLAHANLSMTLASPSGNPNPFHSAIADEREQSKTSPPLLLGSRSRHLLPKPPRSSLGSSLETNAAMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSAAVQESHPSNMPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGSSESPLNTLSKKWNSAGGDMNWHNIEIPEKRTREGSFLPPVLVPEKKKTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPTAKPSIVMIEDHVFEEYEEPPVFGKKSIFVARSAGINEQWTQCDNCSKWRKLPVDVLVPPKWTCADNLWDQSRRACSAPDELSPREMDNLLRLIKEFKKQRMTASQRPTLEHESSGLDALANAAILGDDAGDPSRAPVAATTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQQSWVTKDESEVESTSQHLTRGDGSENEARVPNELDSRSQDHADDAAKGHLDLNCQPDREDAQAGTNSMSMMSLLEEANLPLETYLKKNGLTSLMSEQETNSASNMQAQTTNDSEGKQNEDCCTPSAVQEQESSPEESSEQDKGQNNS 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02482 906 Pfam B3 DNA binding domain 323 422 IPR003340 GO:0003677
Aip02g02482 906 ProSiteProfiles B3 DNA-binding domain profile. 323 424 IPR003340 GO:0003677
Aip02g02482 906 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 860 - -
Aip02g02482 906 Coils Coil 641 661 - -
Aip02g02482 906 MobiDBLite consensus disorder prediction 238 269 - -
Aip02g02482 906 MobiDBLite consensus disorder prediction 740 801 - -
Aip02g02482 906 Pfam CW-type Zinc Finger 593 635 IPR011124 GO:0008270
Aip02g02482 906 Gene3D - 591 647 - -
Aip02g02482 906 SMART B3_2 323 423 IPR003340 GO:0003677
Aip02g02482 906 Gene3D - 301 428 IPR015300 -
Aip02g02482 906 MobiDBLite consensus disorder prediction 682 701 - -
Aip02g02482 906 ProSiteProfiles Zinc finger CW-type profile. 588 638 IPR011124 GO:0008270
Aip02g02482 906 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 860 - -
Aip02g02482 906 MobiDBLite consensus disorder prediction 781 801 - -
Aip02g02482 906 CDD B3_DNA 321 422 IPR003340 GO:0003677
Aip02g02482 906 SUPERFAMILY DNA-binding pseudobarrel domain 320 422 IPR015300 -
Aip02g02482 906 MobiDBLite consensus disorder prediction 754 768 - -
Aip02g02482 906 MobiDBLite consensus disorder prediction 853 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02482 Aip-Chr2 98789596 98796791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02482 1 859 B3 DNA Binding Superfamily AT4G32010 50.637 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip02g02482 B3 2.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02482 - - gmx:100778833 1528.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02482 02 98789596 98796791 Aip02g02482 02 98789596 98796791 ECH