Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02474 ATGTACAAGAAGGGGAGATTAGTTGGATGCAATAATAATGGAGCCATAGCTCAGTTTGGATATGTTGAGATTGATCCATCTGGAAGATATGGCCGTTTCAGAGATGTTTTGGGCAAAGGAGCAATGAAGGTAGTGTATAGGGCATTTGATGAAGTGCTTGGAATAGAAGTGGCTTGGAACCAAGTCAAACTTGGTGATGTTTTTCATTCACCAGACCAATTACAACGTCTTTATTCAGAGGTCCATCTTCTCAAGAACCTTGACCATGAATCAATCATGACCTTCCATGACTCTTGGATCGATGTCCACTCTAGATCCTTCAACTTCATCACTGAATTGTTCACCTCTGGCACCCTAAGAGAGTATAGAAAGAAGTACAAGAGAGTAGATATAAGAGCAATTAAGAATTGGGCAAGGCAGATTCTAAGAGGATTGGAGTATTTACACAGCCATGATCCACCAGTGATTCATAGAGACATCAAATGTGACAATATATTTGTGAATGGGCATTTGGGTCAGGTCAAGATTGGTGACTTAGGCCTTGCAGCAATTCTTCGTGATAGTTCACAATATGCACACAGTGTCATTGGTACACCGGAATTTATGGCACCTGAATTGTATGAAGAGGAATACAATGAGCTTGTTGATGTCTATTCATTTGGGATGTGTATGATTGAGTTGTTCACTTCTGAGTTCCCATACAGTGAATGCTCCAACCCAGCTCAAATTTACAAGAAAGTTACTTCAGGGAAGCTACCAAATGCCTATTACAGAATCAATGATTTGGAGGCCCAAAGATTTATTGGAAAGTGTTTGGCAAATGTCTCAGACAGGCTGCCAGCAAAGGACCTCTTGTTGGACCCATTTTTGGAAATGGACCAACTTCACTCACCACTACAAAGCCCAAGCCCAAGATCAAGCCCAACATTACTCAATTTCAATGCCAAAGAGAAGAAGAAACCTTCAATCATGACTGAAGAAACAAAGGGCACACACATGACAATAACAGGCTCCATGAATGAAGAGGATGACACAGTTTTCCTTAAAGTTCAAATTTCCAACCAAAGTGGGAGCACAAGAAACATATACTTCCCATTTGACACCATAAATGACACAGCCATTGATGTGGCAATGGAGATGGTTAAAGAACTTGAAATTAGTGACTTGGAACCAATGGAGATTGCTGAAATGATAGAAGAAGAGGTATCAGCTTTGGTTCCAACATGGAGGGACTTGGGAAATTCTATTAAGTATCAAAGACAACATAGCTTTAACTATGAACAAGAAGAAGATGATTATGATGATGATGATGTTAGCAATAATCACAATCCTTTCTTCTCATTGTCTTCTCCCTCTTCCTCTCATGGTTCTCTCCCAATGCTTTACCAAAATATTACACAAATTGGTGGAAACCATTACCCACTTTCTCATGATTTGCCTCAAGATGATCCCCTTATGAATGATGATGCAAGCTCTCAAAGTTCTTTGGATTCCTTCAAGTATTCCCATTTACACTACTTGGACGCAAGCAATGAAGATAATGATCATGTTTCAACTCTTCTAACTATCAACAACAAGTGCACAAGATTTTGCCCTAGAGAAGAGGTGGTGGAGGCTGATTTCACCAACCAGTTTTGCAACATGAGAATGGATCCTTGCAGTAGGTACCATAAGCCTATGGTAGGGCATGGATTCCCAAGACTAACTAGGATTCAATCATATGTTGATGTGAGGAGGCAACAAATACAGACATCATTGGTGGAGGAGATACATAAAAGAAGGATGTTCAAGACTGTTAATGCCATTGAGAACATTGGATTTCAGAATCCCAAATGA 1836 0.3998 MYKKGRLVGCNNNGAIAQFGYVEIDPSGRYGRFRDVLGKGAMKVVYRAFDEVLGIEVAWNQVKLGDVFHSPDQLQRLYSEVHLLKNLDHESIMTFHDSWIDVHSRSFNFITELFTSGTLREYRKKYKRVDIRAIKNWARQILRGLEYLHSHDPPVIHRDIKCDNIFVNGHLGQVKIGDLGLAAILRDSSQYAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCMIELFTSEFPYSECSNPAQIYKKVTSGKLPNAYYRINDLEAQRFIGKCLANVSDRLPAKDLLLDPFLEMDQLHSPLQSPSPRSSPTLLNFNAKEKKKPSIMTEETKGTHMTITGSMNEEDDTVFLKVQISNQSGSTRNIYFPFDTINDTAIDVAMEMVKELEISDLEPMEIAEMIEEEVSALVPTWRDLGNSIKYQRQHSFNYEQEEDDYDDDDVSNNHNPFFSLSSPSSSHGSLPMLYQNITQIGGNHYPLSHDLPQDDPLMNDDASSQSSLDSFKYSHLHYLDASNEDNDHVSTLLTINNKCTRFCPREEVVEADFTNQFCNMRMDPCSRYHKPMVGHGFPRLTRIQSYVDVRRQQIQTSLVEEIHKRRMFKTVNAIENIGFQNPK 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02474 611 SMART serkin_6 31 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip02g02474 611 CDD STKc_WNK 29 290 - -
Aip02g02474 611 ProSiteProfiles Protein kinase domain profile. 31 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip02g02474 611 Gene3D Transferase(Phosphotransferase) domain 1 114 296 - -
Aip02g02474 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Aip02g02474 611 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK5-RELATED 11 610 - -
Aip02g02474 611 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 610 - -
Aip02g02474 611 Gene3D Phosphorylase Kinase; domain 1 17 112 - -
Aip02g02474 611 Pfam Protein kinase domain 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip02g02474 611 SUPERFAMILY Protein kinase-like (PK-like) 33 291 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02474 Aip-Chr2 98591512 98598297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02474 19 434 MAP Kinase Kinase Kinase AT3G51630 67.064 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Aip02g02474 Pkinase 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02474 K08867 - gmx:100816187 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02474 02 98591512 98598297 Aip02g02474 02 98591512 98598297 ECH
Aip04g02427 04 109838250 109843098 Aip02g02474 02 98591512 98598297 PCT