Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02454 ATGTCTTCAAGGGGGAGAAAAAAAGCAGCTATGCAACGCATGTTGCAACAGCTTCGAACCGCCACAAATTCCAGTGCTATGAACAAAGCCTCTATTATTGTTGATGCCACCAAATACATAGAAGAGTTGAAGCAAAAAGTGGAGGGAATTAACTCAGAGCTAGGAACCGTTGGATCTTCATCATCAACCTCCCAAGATGAATTACCAATGGTGACGGTAGAAACCCTAGAAAGGGGTTTTCTTATTAATGTGTTTTCAGAAAGGAATTGCCCCGGTATGCTTGTGGCAATACTTGAGGCCTTTGAAGAACTGGGTCTTGATGTTCTTGACGCTAGGGTTTCTTGTGAAGACAATTTCCAGCTTGAAGCTGTGGGAGGAGAAGGTCAAGATCAGGAGAGCATCGATGCGCAAGTGGTAAAACAAGCAGTGTTGCAAGCAATCAATAACATGAATTAA 456 0.4298 MSSRGRKKAAMQRMLQQLRTATNSSAMNKASIIVDATKYIEELKQKVEGINSELGTVGSSSSTSQDELPMVTVETLERGFLINVFSERNCPGMLVAILEAFEELGLDVLDARVSCEDNFQLEAVGGEGQDQESIDAQVVKQAVLQAINNMN 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02454 151 CDD ACT_UUR-ACR-like 91 147 - -
Aip02g02454 151 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 151 - -
Aip02g02454 151 Coils Coil 33 53 - -
Aip02g02454 151 Gene3D - 4 57 IPR036638 GO:0046983
Aip02g02454 151 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02454 Aip-Chr2 98198781 98201257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02454 25 145 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 27.068 1.35e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02454 - - aip:107628501 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02454 02 98198781 98201257 Aip07g01301 07 20930371 20931604 ECH
Aip02g02454 02 98198781 98201257 Aip10g01396 10 23749632 23752410 ECH
Aip02g02454 02 98198781 98201257 Aip02g02454 02 98198781 98201257 ECH
Aip02g02454 02 98198781 98201257 Aip01g00293 01 3123992 3127293 ECH