Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02451 ATGGTCCTTCCACATCCACCTACTTCAAGGACCCTCTCTCTTAATGGTAAAGGTTCATTCTCTCCATTGTCAAAGGTTGCCCACTCATTACCGGTTACTCCAATCGTATCTTTGGGTCAAGAAAGTGTACATGGCAGACATCTGGGATGTGCTTCTGATTTAAATACAATGGTTGTCAAGCAGCATATAACTCGATCACTTTCGGTTCCAGTTGATGCCAAAGCCAGCAAATTGAGGTGCACTCAATCTAGGGTCTTGATTCGTATCATTTCAGCCAGGCGGCATCTTGCAACTGTTGATGGAACTTCAACTGGTGATTCTTCAGTCATGGAGATTGTTATTGAGGATGCTACAGTAGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGCAGAGCTCGGGGAAGGAGAGAATACTCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCATCAAGACTGTGCAGTAAAGTGGTTTAGTATTAAGGGCAACAGGACCTGCGATGTCTGCAAGCAGGATGTTCAAAACCTCCCGGTAACACTATTGAAAATTTATGATCGTCAACCCCCTGCCAGACAGCCACCAAATGTGCCACAACCAAGGGAAATAGCTTATTACCAAATGGTCCCTGAaggagagaagaagagatactag 669 0.4275 MVLPHPPTSRTLSLNGKGSFSPLSKVAHSLPVTPIVSLGQESVHGRHLGCASDLNTMVVKQHITRSLSVPVDAKASKLRCTQSRVLIRIISARRHLATVDGTSTGDSSVMEIVIEDATVDIPEEEAVCRICLAELGEGENTLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYDRQPPARQPPNVPQPREIAYYQMVPEGEKKRY 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02451 222 PANTHER OS02G0165000 PROTEIN 6 212 - -
Aip02g02451 222 SUPERFAMILY RING/U-box 124 179 - -
Aip02g02451 222 Pfam RING-variant domain 128 175 IPR011016 GO:0008270
Aip02g02451 222 PANTHER OS02G0165000 PROTEIN 6 212 - -
Aip02g02451 222 ProSiteProfiles Zinc finger RING-CH-type profile. 120 182 IPR011016 GO:0008270
Aip02g02451 222 CDD RING_CH-C4HC3_MARCH 128 176 - -
Aip02g02451 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 183 IPR013083 -
Aip02g02451 222 SMART ringv_2 127 176 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02451 Aip-Chr2 98143491 98144762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02451 111 182 C3H Transcription Factor Family AT2G37950 45.205 1.38e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02451 - - aip:110265370 430.254