Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02408 ATGAGTCTTTCGGGAGACCCACAAAGAAAGCAGGACACATTTACAATCCTTGAATCTGGCATGCTTGTTGATTTTTCATCGCCGATGACGAATACAACAAATTTTCAAGATCCGTATCTCCGCAACTTCTCTGAAATGGCCTTAGCCGTTCCCGAAATACATAGCACTTTAGCTCCTCAACTAAATTGTCATAAATCTATTAATGAAGATGAGGACGGAGATGGATACAATTGGAGGAAATATGGAGAGAAACGGACGAAAGGAGGCGAAAATCCCCGGAGTTATTATAGGTGCGCAGAACCAAATTGCACGATGAAGAAGAAAGTTGGGAGAAACTTGGATGGAAAAATCATTGCCATTATGTACAAGGGAAATCACAACCATCCCAAGCCTTCTAAACCTGTTGGAAGTGCAAATTTTCCATTAGTTAATGAACTTTATGCATCATCATACACTGACTCGGTGAATTTGAATCGACAATCTGTTGGAGGAGGTGTTGAAAATCAACTTGGAGCACACACCAAAAGATTGAAAGGAGGGAATGGAATCTATAGCTATTTGTTTCCGAGTGGGGGCAAAGCTATAAAGGAACCCAGAGTTGTAGTTCAAACTACAACTGAAATTGACATTCTTGACGATGGCTATAAGTGGAGGAAATATGGCCAGAAAGTTGTTAAGGGAAACCCAAACCCAAGGAACTACTATAAGTGTGTGAGTCCAGGTTGTAACGTGAAGAAACATGTGGAGAGAGCTGCAGATGACATAAAGTCTGTGATGACAACCTATGAAGGCAAACACAACCATGATGTTCCTCAAGAAAGATCATCCTTTGCATCTCGCATAGCATCACTCACCAACAACTTTGCAACCCCATCATCATCATCATCACTTCCTCTTCATGACACAAGCCTATCACTATCTTCACCAAGGGCCAACAATGAAAATCAAGCAAGTCAAGAACTTACTACTCTTCCCTTCATTGTTGGAATTCCAAATTTCGGTAGGTCATTGATTGGTACTTCATATGCCAATGAGGGACCAAGCTCAAACAATGAAGAGAAGAAGGATTAG 1071 0.4108 MSLSGDPQRKQDTFTILESGMLVDFSSPMTNTTNFQDPYLRNFSEMALAVPEIHSTLAPQLNCHKSINEDEDGDGYNWRKYGEKRTKGGENPRSYYRCAEPNCTMKKKVGRNLDGKIIAIMYKGNHNHPKPSKPVGSANFPLVNELYASSYTDSVNLNRQSVGGGVENQLGAHTKRLKGGNGIYSYLFPSGGKAIKEPRVVVQTTTEIDILDDGYKWRKYGQKVVKGNPNPRNYYKCVSPGCNVKKHVERAADDIKSVMTTYEGKHNHDVPQERSSFASRIASLTNNFATPSSSSSLPLHDTSLSLSSPRANNENQASQELTTLPFIVGIPNFGRSLIGTSYANEGPSSNNEEKKD 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02408 356 SUPERFAMILY WRKY DNA-binding domain 70 131 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip02g02408 356 MobiDBLite consensus disorder prediction 289 317 - -
Aip02g02408 356 Gene3D WRKY domain 196 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip02g02408 356 Gene3D WRKY domain 59 132 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip02g02408 356 ProSiteProfiles WRKY domain profile. 67 131 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip02g02408 356 PANTHER OS04G0471700 PROTEIN 171 312 - -
Aip02g02408 356 PANTHER OS04G0471700 PROTEIN 70 133 - -
Aip02g02408 356 ProSiteProfiles WRKY domain profile. 206 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip02g02408 356 SMART WRKY_cls 211 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip02g02408 356 SMART WRKY_cls 72 130 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip02g02408 356 Pfam WRKY DNA -binding domain 212 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip02g02408 356 Pfam WRKY DNA -binding domain 74 129 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip02g02408 356 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 70 133 IPR044810 GO:0003700
Aip02g02408 356 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 171 312 IPR044810 GO:0003700
Aip02g02408 356 SUPERFAMILY WRKY DNA-binding domain 203 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02408 Aip-Chr2 97268486 97273165 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02408 74 305 WRKY Transcription Factor Family AT2G38470 45.620 2.45e-71 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aip02g02408 WRKY 1.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02408 K13424 - gmx:100127367 280.411