Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02392 ATGTGTCGATTAGGGTTTCCTTTAACAGCCATAGATAGGTTCCTATGTAGCCAACAACAAAGCCAAGTCCTTCATAGGAAACACCAACAACACAATGATGATGATGTTGCAAAGAATAATAATAATGTTAGTGTTTTTGATGAAGATTTCCACACTAGGTTTTCTAATTGTTATTATGGTGGTGCTTCAAATAACCCTTATTATAAGTTTGAGTGGCCTAATTGCACTACTcaagaagcaagccttgttgttgatgatgatcatgatcatcacctcttagcaatTAGTAGTGCTGATCAAGAAGAGGGTTTCAATTGGCTACAAAAATTCCTCACATTTTGTCACAATAAAGAAGATGTTCAAGCTTTAGGGGAAAATCACAAAATTAGGGGAAGGAACCCTAAGAAAGGTTCTTCTATATCCTTGATCAAAGGACAATGGACTCCTGAGGAAGACAGGAAATTGGAGAAGCTAGTGAAGCAACATGGTATAAGGAAGTGGTCACAAATAGCTGAGAAATTGGAGGGAAGGGTTGGGAAGCAGTGTAGAGAGAGGTGGCATAATCATCTCCGCCCTGATATCAAGAAAGATGGTTGGAGTGAAGAAGAAGAGAGGATTTTGGTAGAAACTCACATGAAAATCGGGAATCGTTGGGCTGAAATCGCGAAGCGAATACCCGGACGAACCGAAAACTCGATCAAAAACCATTGGAACGCAACAAAAAGAAGACAGAACTCAAGGAGAAAGAACAAGAAGCCATCATCATCATCAACCACCTCAAATAATAATGGCAAACCACAATCTTCAATTCTTCAAGACTACATTAGAAGCAAAACCCTAATTGGTACCAATAATATCACTGTTCCTATTACTACTACCACTACTAATTCAACACCAACTATTACTAGTGAATCTGAATCTATCACTAATAATAGTGATATTAATAATAATCCATATTATTCATCACCAACAATCATAGCTGAATCATCATATGATGATGAGTTACTCTTCATGCAACAACTTTTCAAAGAGAATAACCAAATTGTCAATGGAAATGCTGTTATTAAGAACCCTAACGATGAATGTGGTGATGGGTTTGTTCATTATTCCAATTATTATTATCCTCCAAATCCAGGGAACATGCACAACCCCATCATCAATTGA 1164 0.3548 MCRLGFPLTAIDRFLCSQQQSQVLHRKHQQHNDDDVAKNNNNVSVFDEDFHTRFSNCYYGGASNNPYYKFEWPNCTTQEASLVVDDDHDHHLLAISSADQEEGFNWLQKFLTFCHNKEDVQALGENHKIRGRNPKKGSSISLIKGQWTPEEDRKLEKLVKQHGIRKWSQIAEKLEGRVGKQCRERWHNHLRPDIKKDGWSEEEERILVETHMKIGNRWAEIAKRIPGRTENSIKNHWNATKRRQNSRRKNKKPSSSSTTSNNNGKPQSSILQDYIRSKTLIGTNNITVPITTTTTNSTPTITSESESITNNSDINNNPYYSSPTIIAESSYDDELLFMQQLFKENNQIVNGNAVIKNPNDECGDGFVHYSNYYYPPNPGNMHNPIIN 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02392 387 SUPERFAMILY Homeodomain-like 141 237 IPR009057 -
Aip02g02392 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 194 IPR017930 -
Aip02g02392 387 ProSiteProfiles Myb-like domain profile. 191 241 IPR001005 -
Aip02g02392 387 Pfam Myb-like DNA-binding domain 147 204 - -
Aip02g02392 387 PANTHER MYB DOMAIN PROTEIN 64-RELATED 138 344 - -
Aip02g02392 387 ProSiteProfiles Myb-like domain profile. 139 190 IPR001005 -
Aip02g02392 387 SMART sant 195 243 IPR001005 -
Aip02g02392 387 SMART sant 143 192 IPR001005 -
Aip02g02392 387 MobiDBLite consensus disorder prediction 251 270 - -
Aip02g02392 387 CDD SANT 147 190 IPR001005 -
Aip02g02392 387 MobiDBLite consensus disorder prediction 296 315 - -
Aip02g02392 387 PANTHER MYB PROTEIN-RELATED 138 344 - -
Aip02g02392 387 MobiDBLite consensus disorder prediction 227 270 - -
Aip02g02392 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 245 IPR017930 -
Aip02g02392 387 Gene3D - 198 269 - -
Aip02g02392 387 CDD SANT 199 241 IPR001005 -
Aip02g02392 387 Gene3D - 143 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02392 Aip-Chr2 97030388 97032899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02392 135 385 MYB Transcription Factor Family AT5G58850 52.713 1.39e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip02g02392 Myb_DNA-bind_6 8.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02392 K09422 - gmx:100786295 288.885