Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02391 ATGGATGAACCCATGGAAAGTGGTGAGAGGCCAGTCTTCAAAGATATTAGACGCTACTTCTGTGAATACTGTGGCATTTGCAGGTCTAAAAAGATCTTAATTACCTCCCACATCAATTCACAACACAAGGACGAGTTGGAAAAAGCTAGAGCTGAAGGAAATAATGAAGCACATTGCGAAAAGCCCAACAACACTTGCCAACAATGTGGTGCTAGCTTCAAAAAACCTGCCTACTTGTTGCAGCACATGCAAAGCCATTCACTTGAGAGGCCGTATGTGTGTACGGTTGATGATTGTCAGGCAAGTTACAGAAGAAAGGACCATTTGACTCGTCACCTTCTACAGCATGAAGGGAAAACTTTTAAATGTCCAATGGAGAATTGCAACCTAATTTTCTCAATAAAAGGTAATATGGCAAGACATGTTAAAGAGATTCATGATGAAGGATCTACATCCACAAATGTAGAAAGTAAGCAGTTTGTGTGCCCAGAAATTGGCTGTGGAAAGGTTTTCAAGTTTGCGTCAAAGCTTCGTAAACATGAAGATTCTCATGTTAAGCTGCAGTCGGTAGATGTAGTGTGCTTGGAGCCTGGTTGCATGAAACATTTCACTAATAACCAGTGCCTTAAAGAACATATTGAATCCTGTCATCAATATGTAACCTGCGACACTTGTGGAAGTAGACAACTGAAAAAGAATATTAAAAGGCACCTTTGCACACATGAAGCTGACAAATCATTGGCAGAGTTTAAATGTGAATTTAAGGGCTGTAGCTGCAAATTCTCAAGTAAATCTAATCTCGTTACACATAAGAAGGCCGTGCACTTTAAAGAAAAGCCCTTTGTATGTGGTTTTCCTGATTGTGGCCTGAGATTTGCTTACAAACATGTCAGAGATAAACACGAAAAAACTGGGAAACATGTTTTTACCCATGGGGATTTTGAAGAAGCTGATGAACAATTCAGGTCAAGGCCAAGGGGTGGGAGGAAGAGAGTGTGTCCTACAGTAGAAATGTTGGTCAGGAAAAGGGTTACACCACCTAGTCAATTGGAGAATTTGTTATTTATGCAAGAGTGA 1077 0.403 MDEPMESGERPVFKDIRRYFCEYCGICRSKKILITSHINSQHKDELEKARAEGNNEAHCEKPNNTCQQCGASFKKPAYLLQHMQSHSLERPYVCTVDDCQASYRRKDHLTRHLLQHEGKTFKCPMENCNLIFSIKGNMARHVKEIHDEGSTSTNVESKQFVCPEIGCGKVFKFASKLRKHEDSHVKLQSVDVVCLEPGCMKHFTNNQCLKEHIESCHQYVTCDTCGSRQLKKNIKRHLCTHEADKSLAEFKCEFKGCSCKFSSKSNLVTHKKAVHFKEKPFVCGFPDCGLRFAYKHVRDKHEKTGKHVFTHGDFEEADEQFRSRPRGGRKRVCPTVEMLVRKRVTPPSQLENLLFMQE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02391 358 SUPERFAMILY beta-beta-alpha zinc fingers 72 124 IPR036236 -
Aip02g02391 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 151 IPR013087 -
Aip02g02391 358 Gene3D Classic Zinc Finger 157 221 - -
Aip02g02391 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Aip02g02391 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 280 IPR013087 -
Aip02g02391 358 Gene3D Classic Zinc Finger 117 156 - -
Aip02g02391 358 SUPERFAMILY beta-beta-alpha zinc fingers 231 286 IPR036236 -
Aip02g02391 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 121 IPR013087 -
Aip02g02391 358 Gene3D Classic Zinc Finger 9 91 - -
Aip02g02391 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 189 IPR013087 -
Aip02g02391 358 SMART c2h2final6 92 116 IPR013087 -
Aip02g02391 358 SMART c2h2final6 192 217 IPR013087 -
Aip02g02391 358 SMART c2h2final6 250 275 IPR013087 -
Aip02g02391 358 SMART c2h2final6 19 42 IPR013087 -
Aip02g02391 358 SMART c2h2final6 220 241 IPR013087 -
Aip02g02391 358 SMART c2h2final6 281 307 IPR013087 -
Aip02g02391 358 SMART c2h2final6 64 86 IPR013087 -
Aip02g02391 358 SMART c2h2final6 160 184 IPR013087 -
Aip02g02391 358 SMART c2h2final6 121 146 IPR013087 -
Aip02g02391 358 PANTHER ZINC FINGER PROTEIN 9 349 - -
Aip02g02391 358 ProSitePatterns Zinc finger C2H2 type domain signature. 123 146 IPR013087 -
Aip02g02391 358 PANTHER - 9 349 - -
Aip02g02391 358 ProSitePatterns Zinc finger C2H2 type domain signature. 252 275 IPR013087 -
Aip02g02391 358 Pfam Zinc finger, C2H2 type 160 184 IPR013087 -
Aip02g02391 358 Pfam Zinc finger, C2H2 type 65 86 IPR013087 -
Aip02g02391 358 Pfam Zinc finger, C2H2 type 92 116 IPR013087 -
Aip02g02391 358 ProSitePatterns Zinc finger C2H2 type domain signature. 283 307 IPR013087 -
Aip02g02391 358 Gene3D Classic Zinc Finger 245 323 - -
Aip02g02391 358 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Aip02g02391 358 Gene3D Classic Zinc Finger 92 116 - -
Aip02g02391 358 ProSitePatterns Zinc finger C2H2 type domain signature. 162 184 IPR013087 -
Aip02g02391 358 ProSitePatterns Zinc finger C2H2 type domain signature. 194 217 IPR013087 -
Aip02g02391 358 SUPERFAMILY beta-beta-alpha zinc fingers 119 147 IPR036236 -
Aip02g02391 358 ProSitePatterns Zinc finger C2H2 type domain signature. 94 116 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02391 Aip-Chr2 97013304 97015555 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02391 88 310 C2H2 Transcription Factor Family AT1G72050 51.449 1.39e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip02g02391 zf-C2H2 0.00083 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02391 K09191 - gmx:100801812 559.296