Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02373 ATGGCCACTGAAATCGTTTCTGGAAACAGGAATTCGTCGAAGAGGCGCAGGTGTGGAAGTGATTCGTTGGAGGACACTCTTGAGAAGTGGAAGAAGAAGAACATCGACATTCAACATGATTTCTCCACAAATGGGGTGCATGTGGTTCACAAAGTTCCTGCAAAAGGGTCCAAGAAAGGGTGCATGAAAGGTAAAGGAGGGCCTCAGAACTCTGAGTTTAGATACAGAGGTGTGAGGCAGAGGATTTGGGGTAAGTGGGTCGCTGAAATTCGCGAACCAATCAGCAACCATGAGAGTAAGAAGAATGCAAAGAGGCTTTGGCTTGGCACTTTCACCACTGCATTTGAAGCTGCTCTTGCTTATGACAAAGCGGCTAAGACAATGTACGGTTCAGGCGCACGTTTGAACTTTCCGGAGCATGATTTGGAGTCAGTAGGCTCTGAAGAATCACCAAGTAAGAATGGAATTATATTGAGTAGTGGTGAGGCTCCTAAAGCTGAGGATTTGGATGGTAATTTTCATCAGTTTCGTGAAGACAAACCTAATTTTTCTTATGTTGAAGCATTCGAGGGAACAAAGGAAGAAGATCATGATGTCCAAAAAAATGAGAAATGTGATGATGCAAGTGTTGTTCATAAGGAAATGAAGGATATTGAAGCTAAAATACCTGGAGAAAGTGAAGGAATCGAAGGAGAATCAGAAGAGGTTTTAAAGTGTCCTGGCTCTGGTGTTGAGTTTATTGGTATGGCAATGAATTCTGGAGCTGATGGCGCGGCTTCTGACGCCAACGAGCATGAGATTGTAGCGAATAATATAGAAGTACCAATCGAAGAATTGACCAAAAGTTTAACATCATCATGTGATTTGAGCAATATTGACAACCATTCTGATGATTACTTTAACAATCAGATATCAGATGAGGATTGCAACCCCAAACCTAATTATGATCAGTCAAACATAAAAAATGAGGCATATATGGTGAAGAAGAAACATGTGGAGGAAGTAATTTCTGAAATTCTAAGACTTTATAGCAACAAGTGCTCAAATAACTGTATTCAATCTCAAAATGAGAATGATGAAAATCAACCTTCTGTTAATGTTGAAGAAGAGAAGCCACTGATGCCAGTAGAAGCTGACATGGTACATACTTGCAACTGCTACGGCTGCGATAATAGCGATGATGAAATTAAAAATGAGCCTAACGGTTCAGATGACAATGTTGGAGAAATGTATGAGTTTCAGGCTTTGAACAGCAACATTGATAGGAAGCTTGAATTGCAAGAAAAAGGAGATGATGGAAATGTGTTATCTGAATTCAGTTCCAAGCGTAATAGGAAGCTGTGTGAACATCTGAATAATATGCAGGTTGCTAGCATAGAAATGGATCATGATTATAGTTTCTTGAGACCTGACTATGATTTTGGGTTATTAGAAGAGCAGAAGTTACTTGATTTATGCTTTTCACATTTAGGATCTTAG 1479 0.3982 MATEIVSGNRNSSKRRRCGSDSLEDTLEKWKKKNIDIQHDFSTNGVHVVHKVPAKGSKKGCMKGKGGPQNSEFRYRGVRQRIWGKWVAEIREPISNHESKKNAKRLWLGTFTTAFEAALAYDKAAKTMYGSGARLNFPEHDLESVGSEESPSKNGIILSSGEAPKAEDLDGNFHQFREDKPNFSYVEAFEGTKEEDHDVQKNEKCDDASVVHKEMKDIEAKIPGESEGIEGESEEVLKCPGSGVEFIGMAMNSGADGAASDANEHEIVANNIEVPIEELTKSLTSSCDLSNIDNHSDDYFNNQISDEDCNPKPNYDQSNIKNEAYMVKKKHVEEVISEILRLYSNKCSNNCIQSQNENDENQPSVNVEEEKPLMPVEADMVHTCNCYGCDNSDDEIKNEPNGSDDNVGEMYEFQALNSNIDRKLELQEKGDDGNVLSEFSSKRNRKLCEHLNNMQVASIEMDHDYSFLRPDYDFGLLEEQKLLDLCFSHLGS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02373 492 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 327 - -
Aip02g02373 492 ProSiteProfiles AP2/ERF domain profile. 74 138 IPR001471 GO:0003700|GO:0006355
Aip02g02373 492 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Aip02g02373 492 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Aip02g02373 492 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 327 - -
Aip02g02373 492 SUPERFAMILY DNA-binding domain 74 138 IPR016177 GO:0003677
Aip02g02373 492 SMART rav1_2 74 144 IPR001471 GO:0003700|GO:0006355
Aip02g02373 492 MobiDBLite consensus disorder prediction 1 23 - -
Aip02g02373 492 Pfam AP2 domain 74 130 IPR001471 GO:0003700|GO:0006355
Aip02g02373 492 CDD AP2 74 140 IPR001471 GO:0003700|GO:0006355
Aip02g02373 492 Gene3D AP2/ERF domain 74 139 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02373 Aip-Chr2 96770082 96772378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02373 14 159 AP2-EREBP Transcription Factor Family AT2G40340 46.622 1.92e-37 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip02g02373 AP2 5.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02373 - - aip:107625804 997.653